Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Forward (+)

17479069 .. 17481305

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1106500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGATTACACAGCTAGTATTGAGGCAATGTTTGGAAAAGCCTCATAAACCACAATACAGTGGAGGCATCGTCGTAAACCCGGAACTAAAACATGGCTTGAAAGGATGGTCTGCTTTTGGCAATGCAAAACTACAACACAGAGAATCACAAGGCAACGAGTTCGTTGTGGCACATAGCAGATATGAACCGCATGACAGTATTTCTCAAAAAATTTATTTGCATAGGAACAAGCTCTATTCATTCTCTGGTACAGAATTAGTTACGGGCAACTATATATACTGCAACAAAGTCATCATGTACTCCTTCCAAAAATTAATATTTATTTTATATTTGTTTTGTGCAAGTGTAGCTTGGATACAAGTGAGTAACGGTAGTGTACCAGTAACAGCAGTTTTCAAGACAAATAGTGGATTCGTATTTGCTGGTTCGATTGTTGCCAAATCAAATTGTTGGTCCATGCTCAAAGGTGGTCTAACTGTCAATTCATCAGGCCCAGCTGAGCTTTATTTTGAGGTAATACTCAATACTTGTAGGCAAGAGCGTACAAGTAGTCTTTTAGTTATAATTGCGGTGCGTTCTTGTGTCATACATTTCATTCATTTACATTTATGTACTCCGCAGAGCAATATAGCATCTGTTGACATTTGGGTTGATAGCATCTCATTACAACCATTCACCGAAAAGCAATGGAAGTCTCATCAAGATCAAAGCATTACCAAAATTCGTAAGAGAAATGTGAGAATTCAAGCACTTGATGCACAAGGTAATCCACTAGAAAACGCAACAATCTCCATACAACAAAAGTTTTCAAGTTTCCCTTTTGGGTGTGCTATCAACAAGAACATCCTCACCAACATTGCCTACCAAAATTGGTTCACATCAAGGTTCAGAGTCACAACATTTGAAGATGAAATGAAATGGTACAGCACTGAACCTTCTTGGGGTCATGAATATTACTCCGTGGCTGATGCCATGCTTCAGTTTGCGAGAAAACACAATGTTGCAGTCCGTGGCCACAATGTGTTCTGGGAAGATCCCCAGTACAACCCCGGTTGGGTCAAATCACTCACTAAGCAGCAACTTTTTACCGCCACTGCCAAGAGGCTTCACTCTGTTATCAATAGATACAGAGGGCAAGTTATAGCATGGGATGTGGTGAATGAAAATCTACATTTTAATTTCTTTGAACATATCTTGGGTTCAAAAGCTTCTGCCCTTTTTTATAACATGGCTATTAGAACTGATGGAGCAACCACCATGTTCATGAATGAATTTAACACCATTGAGGACAGTAGAGATGGTTTATCTACACCCGCTAAGTACCTTCAGAAGCTGAGAGAGATACAAACTTTTCTGGGTAACAGAAATGCACGGTTAGGGATTGGGCTTGAGTCTCATTTTAGTATGGCTCCTAACCTTCCTTACATAAGAGCTTCAATCGATACTCTTGCTGCTGCAAGATTGCCCATTTGGATTACAGAATTAGATGTGAAAAGCAATCCCAATCAGGCTTTGTACTTGGAACAAATTTTGAGAGAGCTACATGCTCACCCTCAGATTCAAGGAATTATTATTTGGTCTGCTTGGAAACCTCAGGGATGCTACAGAATGTGTTTGACCGATAACAATTTCCGCAACTTGGCCACTGGTAATGTTGTTGACAAGCTGTTACATGAATGGGGTTTGAGGGCTGGCTTAACTTCTTCTGGCATGACAGACGCTAATGGTTTCTTTGAGTCCTCTCTCTCCCATGGTGATTACAAAGTGAAAATCACTCGGCCATCAGCGGTGATAAATTCGTCCTTGGTTCAAACACTGATTGTGGCACCAACCACTGCGTCCCACCAACCTTTGGAGATCCAACTTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

625

Amino Acids

70.72

Weight (kDa)

9.19

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	271 - 527	2.1e-38	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	563, 1224
AccB1I	GGYRCC	1 cut(s)	1825
AccB7I	CCANNNNNTGG	1 cut(s)	1852
AciI	CCGC	7 cut(s)	188, 569, 617, 1089, 1314, 1633, 1787
AclWI	GGATC	2 cut(s)	1028, 1852
AcoI	YGGCCR	3 cut(s)	1012, 1641, 1778
AcsI	RAATTY	6 cut(s)	210, 720, 741, 1271, 1527, 1795
AcuI	CTGAAG	2 cut(s)	962, 1310
AdeI	CACNNNGTG	1 cut(s)	1021
AfaI	GTAC	9 cut(s)	250, 299, 378, 544, 613, 923, 1043, 1322, 1517
AfiI	CCNNNNNNNGG	4 cut(s)	941, 1054, 1639, 1852
AjuI	GAANNNNNNNTTGG	2 cut(s)	1558, 1590
Alw26I	GTCTC	2 cut(s)	699, 1398
AlwI	GGATC	2 cut(s)	1028, 1852
AlwNI	CAGNNNCTG	1 cut(s)	1333
AoxI	GGCC	4 cut(s)	490, 1012, 1641, 1778
ApeKI	GCWGC	3 cut(s)	1075, 1451, 1454
ApoI	RAATTY	6 cut(s)	210, 720, 741, 1271, 1527, 1795
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AseI	ATTAAT	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	453, 491
AsuC2I	CCSGG	2 cut(s)	80, 1050
AsuHPI	GGTGA	6 cut(s)	667, 841, 1168, 1541, 1766, 1801
AvaII	GGWCC	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	1593
BalI	TGGCCA	2 cut(s)	1014, 1643
BanI	GGYRCC	1 cut(s)	1825
BbvI	GCAGC	3 cut(s)	1087, 1438, 1441
BccI	CCATC	4 cut(s)	99, 1238, 1292, 1789
BcgI	CGANNNNNNTGC	4 cut(s)	142, 176, 1430, 1464
BciVI	GTATCC	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	80, 1050
BcoDI	GTCTC	2 cut(s)	699, 1398
BfaI	CTAG	2 cut(s)	14, 773
BfmI	CTRYAG	1 cut(s)	1603
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	1076, 1452, 1455
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	3 cut(s)	1077, 1453, 1456
Bme1390I	CCNGG	2 cut(s)	80, 1050
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	453, 491
BmiI	GGNNCC	2 cut(s)	1410, 1827
BmrFI	CCNGG	2 cut(s)	80, 1050
BmrI	ACTGGG	1 cut(s)	1033
BmsI	GCATC	6 cut(s)	75, 641, 666, 745, 958, 1589
BmuI	ACTGGG	1 cut(s)	1033
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	1409
BpuMI	CCSGG	2 cut(s)	80, 1050
Bsa29I	ATCGAT	1 cut(s)	1440
BsaJI	CCNNGG	5 cut(s)	960, 1009, 1048, 1750, 1803
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	4 cut(s)	941, 1054, 1639, 1852
Bse1I	ACTGG	3 cut(s)	380, 1039, 1651
Bse21I	CCTNAGG	1 cut(s)	1593
Bse3DI	GCAATG	4 cut(s)	32, 127, 692, 855
BseCI	ATCGAT	1 cut(s)	1440
BseDI	CCNNGG	5 cut(s)	960, 1009, 1048, 1750, 1803
BseGI	GGATG	4 cut(s)	110, 843, 1156, 1604
BseLI	CCNNNNNNNGG	4 cut(s)	941, 1054, 1639, 1852
BseMI	GCAATG	4 cut(s)	32, 127, 692, 855
BseMII	CTCAG	4 cut(s)	489, 1325, 1568, 1607
BseNI	ACTGG	3 cut(s)	380, 1039, 1651
BseXI	GCAGC	3 cut(s)	1087, 1438, 1441
BseYI	CCCAGC	1 cut(s)	493
BshFI	GGCC	4 cut(s)	492, 1014, 1643, 1780
BshNI	GGYRCC	1 cut(s)	1825
BshVI	ATCGAT	1 cut(s)	1440
BsiSI	CCGG	2 cut(s)	80, 1050
BslFI	GGGAC	1 cut(s)	1825
BslI	CCNNNNNNNGG	4 cut(s)	941, 1054, 1639, 1852
BsmAI	GTCTC	2 cut(s)	699, 1398
BsmFI	GGGAC	1 cut(s)	1825
BsnI	GGCC	4 cut(s)	492, 1014, 1643, 1780
Bsp143I	GATC	3 cut(s)	703, 1033, 1857
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	1750
BspACI	CCGC	7 cut(s)	188, 569, 617, 1089, 1314, 1633, 1787
BspANI	GGCC	4 cut(s)	492, 1014, 1643, 1780
BspCNI	CTCAG	4 cut(s)	490, 1326, 1567, 1606
BspDI	ATCGAT	1 cut(s)	1440
BspHI	TCATGA	2 cut(s)	946, 1263
BspLI	GGNNCC	2 cut(s)	1410, 1827
BspPI	GGATC	2 cut(s)	1028, 1852
BspT107I	GGYRCC	1 cut(s)	1825
BsrDI	GCAATG	4 cut(s)	32, 127, 692, 855
BsrI	ACTGG	3 cut(s)	380, 1039, 1651
BssECI	CCNNGG	5 cut(s)	960, 1009, 1048, 1750, 1803
BssMI	GATC	3 cut(s)	703, 1033, 1857
BssT1I	CCWWGG	2 cut(s)	1750, 1803
Bst4CI	ACNGT	6 cut(s)	59, 197, 371, 478, 1292, 1374
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	1693
BstDEI	CTNAG	6 cut(s)	498, 1071, 1317, 1334, 1554, 1593
BstDSI	CCRYGG	3 cut(s)	960, 1009, 1750
BstF5I	GGATG	4 cut(s)	110, 843, 1156, 1604
BstKTI	GATC	3 cut(s)	706, 1036, 1860
BstMAI	GTCTC	2 cut(s)	699, 1398
BstMBI	GATC	3 cut(s)	703, 1033, 1857
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 755
BstNSI	RCATGY	1 cut(s)	1547
BstSCI	CCNGG	2 cut(s)	78, 1048
BstSFI	CTRYAG	1 cut(s)	1603
BstV1I	GCAGC	3 cut(s)	1087, 1438, 1441
BstX2I	RGATCY	2 cut(s)	1033, 1857
BstYI	RGATCY	2 cut(s)	1033, 1857
Bsu15I	ATCGAT	1 cut(s)	1440
Bsu36I	CCTNAGG	1 cut(s)	1593
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	492, 1014, 1643, 1780
BsuTUI	ATCGAT	1 cut(s)	1440
BtgI	CCRYGG	3 cut(s)	960, 1009, 1750
BtsCI	GGATG	4 cut(s)	110, 843, 1156, 1604
BtsI	GCAGTG	2 cut(s)	1092, 1833
BtsIMutI	CAGTG	6 cut(s)	64, 927, 1092, 1644, 1814, 1833
Cac8I	GCNNGC	1 cut(s)	1693
CaiI	CAGNNNCTG	1 cut(s)	1333
CciI	TCATGA	2 cut(s)	946, 1263
Cfr13I	GGNCC	2 cut(s)	453, 491
ClaI	ATCGAT	1 cut(s)	1440
CseI	GACGC	2 cut(s)	1727, 1827
Csp6I	GTAC	9 cut(s)	249, 298, 377, 543, 612, 922, 1042, 1321, 1516
CviQI	GTAC	9 cut(s)	249, 298, 377, 543, 612, 922, 1042, 1321, 1516
DdeI	CTNAG	6 cut(s)	498, 1071, 1317, 1334, 1554, 1593
DpnI	GATC	3 cut(s)	705, 1035, 1859
DpnII	GATC	3 cut(s)	703, 1033, 1857
DraIII	CACNNNGTG	1 cut(s)	1021
EaeI	YGGCCR	3 cut(s)	1012, 1641, 1778
Eco130I	CCWWGG	2 cut(s)	1750, 1803
Eco47I	GGWCC	1 cut(s)	453
Eco57I	CTGAAG	2 cut(s)	962, 1310
Eco81I	CCTNAGG	1 cut(s)	1593
EcoRI	GAATTC	1 cut(s)	741
EcoT14I	CCWWGG	2 cut(s)	1750, 1803
ErhI	CCWWGG	2 cut(s)	1750, 1803
FalI	AAGNNNNNCTT	4 cut(s)	334, 366, 802, 834
FaqI	GGGAC	1 cut(s)	1825
FauI	CCCGC	1 cut(s)	1321
Fnu4HI	GCNGC	3 cut(s)	1076, 1452, 1455
FokI	GGATG	4 cut(s)	117, 830, 1163, 1611
Fsp4HI	GCNGC	3 cut(s)	1076, 1452, 1455
FspBI	CTAG	2 cut(s)	14, 773
GluI	GCNGC	3 cut(s)	1076, 1452, 1455
GsaI	CCCAGC	1 cut(s)	497
HaeIII	GGCC	4 cut(s)	492, 1014, 1643, 1780
HapII	CCGG	2 cut(s)	80, 1050
HgaI	GACGC	2 cut(s)	1727, 1827
HincII	GTYRAC	2 cut(s)	640, 1660
HindII	GTYRAC	2 cut(s)	640, 1660
HindIII	AAGCTT	1 cut(s)	1206
HinfI	GANTC	6 cut(s)	143, 411, 891, 1391, 1558, 1736
HpaII	CCGG	2 cut(s)	80, 1050
HphI	GGTGA	6 cut(s)	667, 841, 1168, 1541, 1766, 1801
Hpy166II	GTNNAC	5 cut(s)	76, 377, 640, 876, 1660
Hpy188I	TCNGA	3 cut(s)	890, 1329, 1557
Hpy188III	TCNNGA	4 cut(s)	397, 701, 947, 1264
Hpy8I	GTNNAC	5 cut(s)	76, 377, 640, 876, 1660
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	313, 945, 1334, 1427
HpyCH4III	ACNGT	6 cut(s)	59, 197, 371, 478, 1292, 1374
HpyCH4V	TGCA	8 cut(s)	125, 220, 282, 341, 758, 1004, 1370, 1457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 755
HpyF3I	CTNAG	6 cut(s)	498, 1071, 1317, 1334, 1554, 1593
Kzo9I	GATC	3 cut(s)	703, 1033, 1857
LmnI	GCTCC	2 cut(s)	1247, 1414
Lsp1109I	GCAGC	3 cut(s)	1087, 1438, 1441
LweI	GCATC	6 cut(s)	75, 641, 666, 745, 958, 1589
MaeI	CTAG	2 cut(s)	14, 773
MaeIII	GTNAC	6 cut(s)	259, 365, 382, 892, 1358, 1668
MalI	GATC	3 cut(s)	705, 1035, 1859
MboI	GATC	3 cut(s)	703, 1033, 1857
MboII	GAAGA	3 cut(s)	917, 1043, 1695
MflI	RGATCY	2 cut(s)	1033, 1857
MlsI	TGGCCA	2 cut(s)	1014, 1643
MluNI	TGGCCA	2 cut(s)	1014, 1643
MlyI	GAGTC	3 cut(s)	900, 1400, 1745
Mox20I	TGGCCA	2 cut(s)	1014, 1643
MscI	TGGCCA	2 cut(s)	1014, 1643
MseI	TTAA	4 cut(s)	314, 1176, 1275, 1697
MslI	CAYNNNNRTG	1 cut(s)	1262
Msp20I	TGGCCA	2 cut(s)	1014, 1643
MspA1I	CMGCKG	2 cut(s)	497, 1787
MspI	CCGG	2 cut(s)	80, 1050
MspR9I	CCNGG	2 cut(s)	80, 1050
MwoI	GCNNNNNNNGC	2 cut(s)	347, 755
NciI	CCSGG	2 cut(s)	80, 1050
NcoI	CCATGG	1 cut(s)	1750
NdeII	GATC	3 cut(s)	703, 1033, 1857
NlaIV	GGNNCC	2 cut(s)	1410, 1827
NmeAIII	GCCGAG	1 cut(s)	1756
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	1 cut(s)	1547
PagI	TCATGA	2 cut(s)	946, 1263
PfeI	GAWTC	3 cut(s)	143, 411, 1558
PflMI	CCANNNNNTGG	1 cut(s)	1852
PkrI	GCNGC	3 cut(s)	1077, 1453, 1456
PleI	GAGTC	3 cut(s)	899, 1399, 1744
PpsI	GAGTC	3 cut(s)	899, 1399, 1744
PshBI	ATTAAT	1 cut(s)	314
PsiI	TTATAA	2 cut(s)	563, 1224
PspFI	CCCAGC	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	1410, 1827
PspPI	GGNCC	2 cut(s)	453, 491
PstNI	CAGNNNCTG	1 cut(s)	1333
PsuI	RGATCY	2 cut(s)	1033, 1857
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	9 cut(s)	250, 299, 378, 544, 613, 923, 1043, 1322, 1517
RsaNI	GTAC	9 cut(s)	249, 298, 377, 543, 612, 922, 1042, 1321, 1516
RseI	CAYNNNNRTG	1 cut(s)	1262
SaqAI	TTAA	4 cut(s)	314, 1176, 1275, 1697
SatI	GCNGC	3 cut(s)	1076, 1452, 1455
Sau3AI	GATC	3 cut(s)	703, 1033, 1857
Sau96I	GGNCC	2 cut(s)	453, 491
SchI	GAGTC	3 cut(s)	900, 1400, 1745
ScrFI	CCNGG	2 cut(s)	80, 1050
SfaNI	GCATC	6 cut(s)	75, 641, 666, 745, 958, 1589
SfcI	CTRYAG	1 cut(s)	1603
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	1262
SmlI	CTYRAG	1 cut(s)	1388
SmoI	CTYRAG	1 cut(s)	1388
SsiI	CCGC	7 cut(s)	188, 569, 617, 1089, 1314, 1633, 1787
SspI	AATATT	2 cut(s)	318, 953
SspMI	CTAG	2 cut(s)	14, 773
StyD4I	CCNGG	2 cut(s)	78, 1048
StyI	CCWWGG	2 cut(s)	1750, 1803
TaaI	ACNGT	6 cut(s)	59, 197, 371, 478, 1292, 1374
TaqI	TCGA	2 cut(s)	428, 1440
TaqII	GACCGA	1 cut(s)	1634
TatI	WGTACW	4 cut(s)	297, 611, 1041, 1515
TfiI	GAWTC	3 cut(s)	143, 411, 1558
Tru1I	TTAA	4 cut(s)	314, 1176, 1275, 1697
Tru9I	TTAA	4 cut(s)	314, 1176, 1275, 1697
TscAI	CASTG	6 cut(s)	64, 934, 1099, 1651, 1821, 1840
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	3 cut(s)	1075, 1451, 1454
Tsp45I	GTSAC	1 cut(s)	892
TspGWI	ACGGA	2 cut(s)	949, 998
TspRI	CASTG	6 cut(s)	64, 934, 1099, 1651, 1821, 1840
Van91I	CCANNNNNTGG	1 cut(s)	1852
VpaK11BI	GGWCC	1 cut(s)	453
VspI	ATTAAT	1 cut(s)	314
XapI	RAATTY	6 cut(s)	210, 720, 741, 1271, 1527, 1795
XceI	RCATGY	1 cut(s)	1547
XspI	CTAG	2 cut(s)	14, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.