FvH4_2g03840

ubiquitin-dependent protein catabolic process

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
3057072 .. 3060002
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03840.t1

Sequence Viewer

Length: 1740 bp
ATGAAGATGAATGTTGGGAGACAAAACAATCTGCTTCTTCTGGTGTTATGCACCTTTATTTGTTCAGGGTTTGAAGTAGAAGGTTTACCCTATGATTATTCAGCAAGTATAGAGTGTTTGGCAAACCCTCAGAAACCCAAGTATGGTGGAGGTATCATAATGAACCCCGAGTTCAATAATGGGTTAAAAGGATGGTCTTCTTTTGGCAATGCAAAACTAGAGCACAAAGAATCACAGGGTAACAAATTCCTTGTGGCTCTCAGTCGAAGTCAGCCGCATGATAGCATGTCTCAGAAGGTTTACCTGCAGGCTGACAAGCTCTACACATTTTCTGCTTGGATACAAGCAAGCAGTGGCAGTGGCATTCCAATAGCAGCTATGTTCAAAACAGCTTCTGGATTTCTAAGTGCTGGTCAGGTTATTGCGGAATCAAGTTGTTGGTCCATGCTCAAGGGTGGTCTAACTGTCGAGGCTTCAGGCGATGCCGAGCTCTATTTCGAGAGCAAGAACACTTCTGTTGAGATTTGGGTTGACAGCATCTCGTTGCAACCGTTCACCAAAAACCAATGGAAATCTCATCAAGATCAAAGCATTGCCATGAATCGTAAGAGAAAAGTGCGAATCCAAGCAGTTGATGCACGAGGCAGTCCTCTACCAAATGCAACAATCTCCATCCAACAAAAGTATCCAAGTTTCCCTTTTGGTTGTTCTATGACCAAGCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTCACATCAAGGTTTAGAGTGACAACATTTGGGGACGAAATGAAATGGTATAGCACAGAATATGTCCAGGGACACGAGGACTACTCGGTTGCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCACAATGTGTTATGGGACGATCCCCAGTACCAACTCGGTTGGGTCAAATCGCTCGATGCACAACAACTCGAAAGTGCAACTAACAAGAGGCTGAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCCTGGGATGTTGTCAACGAAAACTTACATTTCAATTTCTTTGAAAGTAAGATGGGTCCAAATGCTTCAGCAATTTTTTATAACTGGGCTACTAAAGCTGATGGAGGAACCCCTTTGTTCTTGAATGACTTCAATACCATTGAGGAGAGCAGAGATGAACTATCCTCTCCAGCTAAGTACCTCCAGAAGCTCAGAGAGATACAAAGCTTTCCGGGTAATGAGGGCGGACGATATGGAATCGGGCTTGAGTCTCATTTCGATAGTAGTATTCCTAACATTCCTTACATACGAGCATCTCTTGATACTCTTGCGGCTGCAAAAGTTCCCATTTGGATTACAGAATTGGACGTATCAAGTCATCTCGATCAGCCATTATACTTGGAGCAACTTCTTAGGGAGTTGCACTCTCACCCTCAGATTCAAGGAATAGTTATTTGGGGTGGACGAGGACCCCAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTCAACAATTTGCCAACCGGTGACGTTGTGGACAAGTTACTACGAGAATGGGGTTATTGGACCTCGGATTCGGATTCTTTCACAACAGACAACAATGGTTATTTTGAGGCCTCCCTTCCCCATGGAGATTATGATGTGAAGATCAGCCATTATTCCGCTGTAGATTCCTCCAGGGTTCACAAATTGAATGTAGCATCAACTACTAGGTCTCTGCAACTTATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

580

Amino Acids

65.01

Weight (kDa)

6.18

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 51 - 170 4.4e-09 Carbohydrate binding domain
Glyco_hydro_10 PF00331 232 - 489 3.5e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
Acc36I ACCTGC 1 cut(s) 312
AciI CCGC 5 cut(s) 275, 425, 1248, 1334, 1668
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 2 cut(s) 245, 988
AcuI CTGAAG 3 cut(s) 459, 842, 1074
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 2 cut(s) 923, 1202
AfiI CCNNNNNNNGG 1 cut(s) 143
AgeI ACCGGT 1 cut(s) 1529
AjnI CCWGG 3 cut(s) 819, 1025, 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 1441, 1473
AluBI AGCT 9 cut(s) 319, 377, 392, 490, 721, 1121, 1196, 1213, 1230
AluI AGCT 9 cut(s) 319, 377, 392, 490, 721, 1121, 1196, 1213, 1230
Alw21I GWGCWC 2 cut(s) 225, 492
Alw26I GTCTC 4 cut(s) 13, 294, 1278, 1725
AlwI GGATC 1 cut(s) 908
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 892, 1620
ApeKI GCWGC 2 cut(s) 374, 1337
ApoI RAATTY 2 cut(s) 245, 988
ArsI GACNNNNNNTTYG 2 cut(s) 1564, 1596
AsiGI ACCGGT 1 cut(s) 1529
Asp700I GAANNNNTTC 1 cut(s) 1151
AspS9I GGNCC 4 cut(s) 441, 1079, 1472, 1572
AsuC2I CCSGG 1 cut(s) 1236
AsuHPI GGTGA 3 cut(s) 547, 1424, 1544
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 4 cut(s) 441, 1079, 1472, 1572
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 2 cut(s) 639, 827
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 225, 492
BbvI GCAGC 2 cut(s) 386, 1324
BccI CCATC 4 cut(s) 186, 680, 1069, 1118
BciT130I CCWGG 3 cut(s) 821, 1027, 1684
BciVI GTATCC 2 cut(s) 333, 696
BcnI CCSGG 1 cut(s) 1236
BcoDI GTCTC 4 cut(s) 13, 294, 1278, 1725
BfaI CTAG 2 cut(s) 218, 1716
BfmI CTRYAG 2 cut(s) 305, 1671
BfuAI ACCTGC 1 cut(s) 312
BfuI GTATCC 2 cut(s) 333, 696
BisI GCNGC 4 cut(s) 275, 375, 1335, 1338
BlsI GCNGC 4 cut(s) 276, 376, 1336, 1339
Bme1390I CCNGG 4 cut(s) 821, 1027, 1236, 1684
Bme18I GGWCC 4 cut(s) 441, 1079, 1472, 1572
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 4 cut(s) 441, 1079, 1472, 1572
BmiI GGNNCC 3 cut(s) 1080, 1132, 1474
BmrFI CCNGG 4 cut(s) 821, 1027, 1236, 1684
BmrI ACTGGG 2 cut(s) 913, 1117
BmsI GCATC 7 cut(s) 472, 546, 625, 838, 940, 1325, 1715
BmuI ACTGGG 2 cut(s) 913, 1117
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 4 cut(s) 821, 853, 1412, 1444
BpmI CTGGAG 3 cut(s) 1176, 1190, 1666
BpuEI CTTGAG 2 cut(s) 434, 1289
BpuMI CCSGG 1 cut(s) 1236
BsaI GGTCTC 1 cut(s) 1725
BsaJI CCNNGG 6 cut(s) 820, 1026, 1477, 1575, 1633, 1683
BsaWI WCCGGW 1 cut(s) 1529
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 1529
Bse1I ACTGG 2 cut(s) 919, 1112
Bse3DI GCAATG 4 cut(s) 214, 591, 879, 1020
BseBI CCWGG 3 cut(s) 821, 1027, 1684
BseDI CCNNGG 6 cut(s) 820, 1026, 1477, 1575, 1633, 1683
BseGI GGATG 5 cut(s) 197, 672, 723, 1036, 1487
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 4 cut(s) 214, 591, 879, 1020
BseMII CTCAG 5 cut(s) 143, 274, 305, 1228, 1451
BseNI ACTGG 2 cut(s) 919, 1112
BseRI GAGGAG 1 cut(s) 1181
BseXI GCAGC 2 cut(s) 386, 1324
BshFI GGCC 2 cut(s) 894, 1622
BshTI ACCGGT 1 cut(s) 1529
BsiHKAI GWGCWC 2 cut(s) 225, 492
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 1235, 1530
BslFI GGGAC 3 cut(s) 800, 837, 923
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 4 cut(s) 13, 294, 1278, 1725
BsmFI GGGAC 3 cut(s) 800, 837, 923
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 2 cut(s) 894, 1622
Bso31I GGTCTC 1 cut(s) 1725
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 225, 492
Bsp143I GATC 4 cut(s) 583, 913, 1387, 1653
Bsp19I CCATGG 1 cut(s) 1633
BspACI CCGC 5 cut(s) 275, 425, 1248, 1334, 1668
BspANI GGCC 2 cut(s) 894, 1622
BspCNI CTCAG 5 cut(s) 142, 273, 304, 1227, 1450
BspLI GGNNCC 3 cut(s) 1080, 1132, 1474
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 312
BspPI GGATC 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 1725
BsrDI GCAATG 4 cut(s) 214, 591, 879, 1020
BsrFI RCCGGY 1 cut(s) 1529
BsrI ACTGG 2 cut(s) 919, 1112
BssAI RCCGGY 1 cut(s) 1529
BssECI CCNNGG 6 cut(s) 820, 1026, 1477, 1575, 1633, 1683
BssMI GATC 4 cut(s) 583, 913, 1387, 1653
BssSI CACGAG 2 cut(s) 639, 827
BssT1I CCWWGG 2 cut(s) 1477, 1633
Bst2BI CACGAG 2 cut(s) 639, 827
Bst2UI CCWGG 3 cut(s) 821, 1027, 1684
Bst4CI ACNGT 2 cut(s) 466, 552
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 309, 349
BstDEI CTNAG 8 cut(s) 129, 260, 291, 404, 1197, 1214, 1415, 1437
BstDSI CCRYGG 1 cut(s) 1633
BstF5I GGATG 5 cut(s) 197, 672, 723, 1036, 1487
BstKTI GATC 4 cut(s) 586, 916, 1390, 1656
BstMAI GTCTC 4 cut(s) 13, 294, 1278, 1725
BstMBI GATC 4 cut(s) 583, 913, 1387, 1653
BstMWI GCNNNNNNNGC 2 cut(s) 635, 1118
BstNI CCWGG 3 cut(s) 821, 1027, 1684
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 4 cut(s) 819, 1025, 1234, 1682
BstSFI CTRYAG 2 cut(s) 305, 1671
BstV1I GCAGC 2 cut(s) 386, 1324
BstV2I GAAGAC 1 cut(s) 189
BsuI GTATCC 2 cut(s) 333, 696
BsuRI GGCC 2 cut(s) 894, 1622
BtgI CCRYGG 1 cut(s) 1633
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 5 cut(s) 197, 672, 723, 1036, 1487
BtsI GCAGTG 2 cut(s) 358, 364
BtsIMutI CAGTG 2 cut(s) 358, 364
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 309, 349
CaiI CAGNNNCTG 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 1529
Cfr13I GGNCC 4 cut(s) 441, 1079, 1472, 1572
Csp6I GTAC 2 cut(s) 922, 1201
CspAI ACCGGT 1 cut(s) 1529
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 6 cut(s) 278, 286, 445, 598, 853, 1634
CviQI GTAC 2 cut(s) 922, 1201
DdeI CTNAG 8 cut(s) 129, 260, 291, 404, 1197, 1214, 1415, 1437
DpnI GATC 4 cut(s) 585, 915, 1389, 1655
DpnII GATC 4 cut(s) 583, 913, 1387, 1653
DraIII CACNNNGTG 1 cut(s) 901
EciI GGCGGA 1 cut(s) 1263
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 1477, 1633
Eco147I AGGCCT 1 cut(s) 1622
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 1725
Eco47I GGWCC 4 cut(s) 441, 1079, 1472, 1572
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 459, 842, 1074
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 1472
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 819, 1025, 1682
EcoT14I CCWWGG 2 cut(s) 1477, 1633
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 1477, 1633
FaeI CATG 6 cut(s) 281, 289, 448, 601, 856, 1637
FalI AAGNNNNNCTT 2 cut(s) 682, 714
FaqI GGGAC 3 cut(s) 800, 837, 923
FatI CATG 6 cut(s) 277, 285, 444, 597, 852, 1633
Fnu4HI GCNGC 4 cut(s) 275, 375, 1335, 1338
FokI GGATG 5 cut(s) 204, 659, 710, 1043, 1494
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 4 cut(s) 275, 375, 1335, 1338
FspBI CTAG 2 cut(s) 218, 1716
GluI GCNGC 4 cut(s) 275, 375, 1335, 1338
GsuI CTGGAG 3 cut(s) 1176, 1190, 1666
HaeIII GGCC 2 cut(s) 894, 1622
HapII CCGG 2 cut(s) 1235, 1530
Hin1II CATG 6 cut(s) 281, 289, 448, 601, 856, 1637
HincII GTYRAC 2 cut(s) 532, 1039
HindII GTYRAC 2 cut(s) 532, 1039
HindIII AAGCTT 1 cut(s) 1228
HpaII CCGG 2 cut(s) 1235, 1530
HphI GGTGA 3 cut(s) 547, 1424, 1544
Hpy166II GTNNAC 9 cut(s) 86, 301, 532, 555, 756, 1039, 1466, 1543, 1690
Hpy188I TCNGA 6 cut(s) 132, 294, 1217, 1440, 1579, 1585
Hpy188III TCNNGA 7 cut(s) 396, 499, 581, 1144, 1207, 1322, 1385
Hpy8I GTNNAC 9 cut(s) 86, 301, 532, 555, 756, 1039, 1466, 1543, 1690
HpyAV CCTTC 3 cut(s) 74, 289, 1637
HpyCH4III ACNGT 2 cut(s) 466, 552
HpyCH4IV ACGT 2 cut(s) 1371, 1536
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 1118
HpyF3I CTNAG 8 cut(s) 129, 260, 291, 404, 1197, 1214, 1415, 1437
HpySE526I ACGT 2 cut(s) 1371, 1536
Hsp92II CATG 6 cut(s) 281, 289, 448, 601, 856, 1637
Kzo9I GATC 4 cut(s) 583, 913, 1387, 1653
LmnI GCTCC 1 cut(s) 1405
Lsp1109I GCAGC 2 cut(s) 386, 1324
LweI GCATC 7 cut(s) 472, 546, 625, 838, 940, 1325, 1715
MaeI CTAG 2 cut(s) 218, 1716
MaeII ACGT 2 cut(s) 1371, 1536
MaeIII GTNAC 5 cut(s) 239, 772, 1484, 1532, 1548
MalI GATC 4 cut(s) 585, 915, 1389, 1655
MboI GATC 4 cut(s) 583, 913, 1387, 1653
MboII GAAGA 4 cut(s) 16, 29, 189, 1663
MhlI GDGCHC 2 cut(s) 225, 492
MluCI AATT 7 cut(s) 245, 988, 1057, 1095, 1364, 1519, 1694
MlyI GAGTC 1 cut(s) 1280
MmeI TCCRAC 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 1151
MseI TTAA 2 cut(s) 185, 1738
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 1670
MspI CCGG 2 cut(s) 1235, 1530
MspR9I CCNGG 4 cut(s) 821, 1027, 1236, 1684
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 3 cut(s) 821, 1027, 1684
MwoI GCNNNNNNNGC 2 cut(s) 635, 1118
NciI CCSGG 1 cut(s) 1236
NcoI CCATGG 1 cut(s) 1633
NdeII GATC 4 cut(s) 583, 913, 1387, 1653
NlaIII CATG 6 cut(s) 281, 289, 448, 601, 856, 1637
NlaIV GGNNCC 3 cut(s) 1080, 1132, 1474
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 2 cut(s) 772, 1532
NspI RCATGY 1 cut(s) 289
PceI AGGCCT 1 cut(s) 1622
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PctI GAATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 1151
PfeI GAWTC 9 cut(s) 230, 428, 601, 621, 1260, 1441, 1580, 1586, 1676
PinAI ACCGGT 1 cut(s) 1529
PkrI GCNGC 4 cut(s) 276, 376, 1336, 1339
PleI GAGTC 1 cut(s) 1279
PpsI GAGTC 1 cut(s) 1279
PpuMI RGGWCCY 1 cut(s) 1472
PsiI TTATAA 1 cut(s) 1104
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 1472
Psp6I CCWGG 3 cut(s) 819, 1025, 1682
PspGI CCWGG 3 cut(s) 819, 1025, 1682
PspN4I GGNNCC 3 cut(s) 1080, 1132, 1474
PspPI GGNCC 4 cut(s) 441, 1079, 1472, 1572
PspPPI RGGWCCY 1 cut(s) 1472
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 923, 1202
RsaNI GTAC 2 cut(s) 922, 1201
RseI CAYNNNNRTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 185, 1738
SatI GCNGC 4 cut(s) 275, 375, 1335, 1338
Sau3AI GATC 4 cut(s) 583, 913, 1387, 1653
Sau96I GGNCC 4 cut(s) 441, 1079, 1472, 1572
SbfI CCTGCAGG 1 cut(s) 309
SchI GAGTC 1 cut(s) 1280
ScrFI CCNGG 4 cut(s) 821, 1027, 1236, 1684
SdaI CCTGCAGG 1 cut(s) 309
SduI GDGCHC 2 cut(s) 225, 492
SfaNI GCATC 7 cut(s) 472, 546, 625, 838, 940, 1325, 1715
SfcI CTRYAG 2 cut(s) 305, 1671
SinI GGWCC 4 cut(s) 441, 1079, 1472, 1572
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 449, 1268
SmoI CTYRAG 2 cut(s) 449, 1268
Sse8387I CCTGCAGG 1 cut(s) 309
Sse9I AATT 7 cut(s) 245, 988, 1057, 1095, 1364, 1519, 1694
SseBI AGGCCT 1 cut(s) 1622
SsiI CCGC 5 cut(s) 275, 425, 1248, 1334, 1668
SspMI CTAG 2 cut(s) 218, 1716
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 1622
StyD4I CCNGG 4 cut(s) 819, 1025, 1234, 1682
StyI CCWWGG 2 cut(s) 1477, 1633
TaaI ACNGT 2 cut(s) 466, 552
TaiI ACGT 2 cut(s) 1374, 1539
TaqI TCGA 7 cut(s) 265, 468, 498, 948, 963, 1281, 1386
TasI AATT 7 cut(s) 245, 988, 1057, 1095, 1364, 1519, 1694
TauI GCSGC 2 cut(s) 277, 1337
TfiI GAWTC 9 cut(s) 230, 428, 601, 621, 1260, 1441, 1580, 1586, 1676
Tru1I TTAA 2 cut(s) 185, 1738
Tru9I TTAA 2 cut(s) 185, 1738
TscAI CASTG 2 cut(s) 358, 364
TseFI GTSAC 2 cut(s) 772, 1532
TseI GCWGC 2 cut(s) 374, 1337
Tsp45I GTSAC 2 cut(s) 772, 1532
TspDTI ATGAA 7 cut(s) 17, 23, 176, 614, 809, 1194, 1521
TspRI CASTG 2 cut(s) 358, 364
VpaK11BI GGWCC 4 cut(s) 441, 1079, 1472, 1572
XapI RAATTY 2 cut(s) 245, 988
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 1151
XspI CTAG 2 cut(s) 218, 1716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.