Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Reverse (-)

57920370 .. 57925770

Gene Structure 5401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0417000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCAGATACATGGTTTGGGGAGGAAGACATGGACAACTAAGGGAGACGAACAGGAGGCAGCAAAGAAGGAATACATTGACTGCATTAAGTTGCTAGAAGTGGAGCTTGGGGACAAGCCTTCCTTTGGCGGCGAGACCCTCGGATTTGTTTTGCTTCTGCTGTTAGGAATTGCACAGTGTGAGGAGAATAAGGCTGGCAAGAAAGTTGGAAAGTTCTACAGCAAGCTCTTTCCTCAATCGGAAGCCCAATTACTTGGATCAAGAAGCTTCCACCAGCCAAAACATTTGAGCATCCCACAATTTTGGAGTTTTTTAAGTGTTGCGAGAACTGCAAGGAGCCTAACGTTCATGGACAACAGAACGACCACCACCAGCAATTCCTTCGCTCCTTTTGCCCGTAATAACAGAAGTGGTGATGGTAGAGGAGGAGGCTGGGAGGTGAAAGATGAGAGAGAGAGATCGAGAGGTCGCGGCGGAGGAGCAAGGGGCCGTGGTGGTGGCTCTGGCAAAGATAGAGTTGATGCACTCGGTAGATTATTGACACGTATATTGCGGCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAAGGTTCATGATATTTTAAAGCTGAACTTGAAGACATTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATTAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGTTTCAGCCTCTTGGAAGAAAATGGGGAACTTTTGATACGTGCAAACCAAGGTCACTCAACAACGGTAGTTGAAACCGAAAGGTTATTAAAGCCAATCCTTTCATCTGAAGAAGTTCCAGTATGCGTGCATGGAACTTATAGGAAGAATTTGGATTCAATATTAGAGTCTGGTCTGAAGTGCATGACGAGATTGCATGTACACTTTGCAAGTGGCTTGCCAACAGATGGGGAAGTGATCAGCGGTATGAGACGGGATGTTAACATTTTGATCTTTCTTGATGTCAGAAAAGCTTTAGCTGAGGGAATGAAGTTCTACATTTCAGACAACAAGGTGATCTTGACTGAAGGCTTTGATGGTGTTGTTTCAGTCAAGTACTTCGAGAAAATAGAATCGTGGCCTGGTAGAAAGCCCATAGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

378

Amino Acids

42.22

Weight (kDa)

9.43

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	174 - 354	9.3e-58	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccII	CGCG	1 cut(s)	471
AciI	CCGC	6 cut(s)	129, 471, 474, 553, 586, 954
AclI	AACGTT	1 cut(s)	344
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	2 cut(s)	574, 859
AcuI	CTGAAG	3 cut(s)	840, 908, 1077
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	912, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	125, 938
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	4 cut(s)	574, 634, 785, 870
AjnI	CCWGG	1 cut(s)	1111
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	8 cut(s)	106, 226, 267, 625, 660, 1004, 1010, 1130
AluI	AGCT	8 cut(s)	106, 226, 267, 625, 660, 1004, 1010, 1130
Alw21I	GWGCWC	1 cut(s)	662
Alw26I	GTCTC	3 cut(s)	39, 128, 955
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	2 cut(s)	487, 1109
ApeKI	GCWGC	2 cut(s)	59, 709
ApoI	RAATTY	2 cut(s)	574, 859
Asp700I	GAANNNNTTC	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	3 cut(s)	425, 451, 1057
BanII	GRGCYC	1 cut(s)	662
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BbsI	GAAGAC	2 cut(s)	32, 641
Bbv12I	GWGCWC	1 cut(s)	662
BbvCI	CCTCAGC	1 cut(s)	1011
BbvI	GCAGC	2 cut(s)	71, 721
BccI	CCATC	4 cut(s)	410, 587, 932, 1061
BceAI	ACGGC	1 cut(s)	474
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	1 cut(s)	1113
BclI	TGATCA	1 cut(s)	948
BcoDI	GTCTC	3 cut(s)	39, 128, 955
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	5 cut(s)	60, 130, 472, 554, 710
BlsI	GCNGC	5 cut(s)	61, 131, 473, 555, 711
BmcAI	AGTACT	1 cut(s)	1088
Bme1390I	CCNGG	1 cut(s)	1113
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	338, 488
BmrFI	CCNGG	1 cut(s)	1113
BmsI	GCATC	2 cut(s)	300, 511
BpiI	GAAGAC	2 cut(s)	32, 641
Bpu10I	CCTNAGC	1 cut(s)	1011
BsaAI	YACGTR	2 cut(s)	545, 752
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	139, 490, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 938
Bse1I	ACTGG	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	1113
BseDI	CCNNGG	3 cut(s)	139, 490, 760
BseGI	GGATG	2 cut(s)	291, 973
BseLI	CCNNNNNNNGG	2 cut(s)	125, 938
BseMII	CTCAG	2 cut(s)	558, 1002
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	4 cut(s)	197, 438, 441, 492
BseXI	GCAGC	2 cut(s)	71, 721
BseYI	CCCAGC	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	489, 1111
BsiHKAI	GWGCWC	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	125, 938
BsmAI	GTCTC	3 cut(s)	39, 128, 955
BsmBI	CGTCTC	2 cut(s)	39, 955
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	489, 1111
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp1407I	TGTACA	1 cut(s)	910
Bsp143I	GATC	5 cut(s)	257, 458, 948, 981, 1047
BspACI	CCGC	6 cut(s)	129, 471, 474, 553, 586, 954
BspANI	GGCC	2 cut(s)	489, 1111
BspCNI	CTCAG	2 cut(s)	559, 1003
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	338, 488
BspPI	GGATC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	910
BsrI	ACTGG	1 cut(s)	830
BssECI	CCNNGG	3 cut(s)	139, 490, 760
BssMI	GATC	5 cut(s)	257, 458, 948, 981, 1047
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	1 cut(s)	1113
Bst4CI	ACNGT	3 cut(s)	177, 670, 778
BstAUI	TGTACA	1 cut(s)	910
BstBAI	YACGTR	2 cut(s)	545, 752
BstC8I	GCNNGC	4 cut(s)	196, 224, 839, 929
BstDEI	CTNAG	3 cut(s)	39, 567, 1011
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	291, 973
BstFNI	CGCG	1 cut(s)	471
BstKTI	GATC	5 cut(s)	260, 461, 951, 984, 1050
BstMAI	GTCTC	3 cut(s)	39, 128, 955
BstMBI	GATC	5 cut(s)	257, 458, 948, 981, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 392
BstNI	CCWGG	1 cut(s)	1113
BstNSI	RCATGY	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	1111
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	71, 721
BstV2I	GAAGAC	2 cut(s)	32, 641
BstXI	CCANNNNNNTGG	2 cut(s)	254, 303
BsuRI	GGCC	2 cut(s)	489, 1111
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	291, 973
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	4 cut(s)	196, 224, 839, 929
CciI	TCATGA	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	911, 1087
CviAII	CATG	7 cut(s)	11, 30, 349, 611, 842, 895, 908
CviQI	GTAC	2 cut(s)	911, 1087
DdeI	CTNAG	3 cut(s)	39, 567, 1011
DpnI	GATC	5 cut(s)	259, 460, 950, 983, 1049
DpnII	GATC	5 cut(s)	257, 458, 948, 981, 1047
DraI	TTTAAA	1 cut(s)	621
DraIII	CACNNNGTG	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	660
Eco57I	CTGAAG	3 cut(s)	840, 908, 1077
EcoICRI	GAGCTC	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	760
Esp3I	CGTCTC	2 cut(s)	39, 955
FaeI	CATG	7 cut(s)	14, 33, 352, 614, 845, 898, 911
FalI	AAGNNNNNCTT	8 cut(s)	90, 122, 107, 139, 614, 646, 1034, 1066
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	7 cut(s)	10, 29, 348, 610, 841, 894, 907
FauNDI	CATATG	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	948
Fnu4HI	GCNGC	5 cut(s)	60, 130, 472, 554, 710
FokI	GGATG	2 cut(s)	278, 980
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	5 cut(s)	60, 130, 472, 554, 710
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	5 cut(s)	60, 130, 472, 554, 710
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	489, 1111
Hin1II	CATG	7 cut(s)	14, 33, 352, 614, 845, 898, 911
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	2 cut(s)	265, 1002
HinfI	GANTC	3 cut(s)	866, 878, 1103
HpaI	GTTAAC	1 cut(s)	973
HphI	GGTGA	3 cut(s)	425, 451, 1057
Hpy166II	GTNNAC	2 cut(s)	913, 973
Hpy188I	TCNGA	8 cut(s)	143, 241, 568, 695, 820, 888, 998, 1036
Hpy188III	TCNNGA	6 cut(s)	261, 462, 611, 989, 1051, 1093
Hpy8I	GTNNAC	2 cut(s)	913, 973
HpyAV	CCTTC	6 cut(s)	61, 129, 391, 598, 690, 1052
HpyCH4III	ACNGT	3 cut(s)	177, 670, 778
HpyCH4IV	ACGT	3 cut(s)	344, 544, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 392
HpyF3I	CTNAG	3 cut(s)	39, 567, 1011
HpySE526I	ACGT	3 cut(s)	344, 544, 751
Hsp92II	CATG	7 cut(s)	14, 33, 352, 614, 845, 898, 911
Ksp22I	TGATCA	1 cut(s)	948
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	5 cut(s)	257, 458, 948, 981, 1047
LmnI	GCTCC	4 cut(s)	103, 336, 391, 479
Lsp1109I	GCAGC	2 cut(s)	71, 721
LweI	GCATC	2 cut(s)	300, 511
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	3 cut(s)	344, 544, 751
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	5 cut(s)	259, 460, 950, 983, 1049
MboI	GATC	5 cut(s)	257, 458, 948, 981, 1047
MboII	GAAGA	5 cut(s)	37, 646, 740, 833, 868
MhlI	GDGCHC	1 cut(s)	662
MluCI	AATT	6 cut(s)	168, 248, 299, 376, 574, 859
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	6 cut(s)	87, 314, 620, 681, 800, 972
MspA1I	CMGCKG	1 cut(s)	954
MspR9I	CCNGG	1 cut(s)	1113
MvaI	CCWGG	1 cut(s)	1113
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	329, 392
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	5 cut(s)	257, 458, 948, 981, 1047
NlaIII	CATG	7 cut(s)	14, 33, 352, 614, 845, 898, 911
NlaIV	GGNNCC	2 cut(s)	338, 488
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	1 cut(s)	911
PagI	TCATGA	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	866, 1103
PflMI	CCANNNNNTGG	1 cut(s)	938
PkrI	GCNGC	5 cut(s)	61, 131, 473, 555, 711
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
Ppu21I	YACGTR	2 cut(s)	545, 752
Psp124BI	GAGCTC	1 cut(s)	662
Psp1406I	AACGTT	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	1111
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	1111
PspN4I	GGNNCC	2 cut(s)	338, 488
PspPI	GGNCC	1 cut(s)	487
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
RsaI	GTAC	2 cut(s)	912, 1088
RsaNI	GTAC	2 cut(s)	911, 1087
SacI	GAGCTC	1 cut(s)	662
SaqAI	TTAA	6 cut(s)	87, 314, 620, 681, 800, 972
SatI	GCNGC	5 cut(s)	60, 130, 472, 554, 710
Sau3AI	GATC	5 cut(s)	257, 458, 948, 981, 1047
Sau96I	GGNCC	1 cut(s)	487
ScaI	AGTACT	1 cut(s)	1088
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	1113
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	2 cut(s)	300, 511
SfcI	CTRYAG	1 cut(s)	217
Sse9I	AATT	6 cut(s)	168, 248, 299, 376, 574, 859
SsiI	CCGC	6 cut(s)	129, 471, 474, 553, 586, 954
SspI	AATATT	2 cut(s)	649, 873
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	662
StyD4I	CCNGG	1 cut(s)	1111
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	3 cut(s)	177, 670, 778
TaiI	ACGT	3 cut(s)	347, 547, 754
TaqI	TCGA	2 cut(s)	461, 1092
TasI	AATT	6 cut(s)	168, 248, 299, 376, 574, 859
TatI	WGTACW	2 cut(s)	910, 1086
TauI	GCSGC	3 cut(s)	132, 474, 556
TfiI	GAWTC	2 cut(s)	866, 1103
Tru1I	TTAA	6 cut(s)	87, 314, 620, 681, 800, 972
Tru9I	TTAA	6 cut(s)	87, 314, 620, 681, 800, 972
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	2 cut(s)	59, 709
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	4 cut(s)	337, 599, 804, 1034
TspRI	CASTG	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	938
XapI	RAATTY	2 cut(s)	574, 859
XceI	RCATGY	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.