Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Forward (+)

4662229 .. 4663146

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG043400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATAGCGACGTTCCGGTACGTAACAGCTGTTTTTAACACATCTACTGGATTCATTCATGCTGGCGCAACTATTGCGGAATCAAATTGTTGGACCTTGCTCAAGGCTGGCCTAACCATGAATGCCTCAGGCCCTGCCGAGCTCTATTTTGAGAGCGAAAACACAACGGTCGAAATTTGGGTGGATAGCATCTCTTTACAACCTTTCACCCAGGAGCAGTGGAAGTCTCATCAAGATCAAAGCATTGAAAAGATTCGTAAGAGCAAGGTCAAATTCCAAGCAGTTGATACGCGAGGAACCCCTCTACCATATGCTACAATCTCTATCAAACAAAAGGCAGGAGGTTTCCCATTTGGGTGTGCTATGAACAATCACATTCTCTCCAACACTGCGTACCAAAATTGGTTCACATCAAGATTCAGAGTGACAACATTCGAAAACGAAATGAAATGGTATAGCACAGAAACTTCCGAGGGACATCAGGACTACTCGGTCCCTGATGCCATGCTTTGGTTTGCAAAGCAGCAAAACATTGCAGTAAGAGGTCACAATATTTTCTGGGATGATCCACAGTACCAACAAGGTTGGGTCAAATCACTCCCTACGAAACAACTCACCATGGACGCATATTGGAGAGCCATAATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

216

Amino Acids

24.76

Weight (kDa)

6.96

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	113 - 203	4.8e-16	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	510
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	174, 272
AfaI	GTAC	3 cut(s)	20, 395, 575
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	29, 142
AluI	AGCT	2 cut(s)	29, 142
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	109, 130
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	174, 272
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	3 cut(s)	93, 131, 493
AsuHPI	GGTGA	2 cut(s)	199, 607
AsuII	TTCGAA	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	93, 493
AxyI	CCTNAGG	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	93, 493
BmgT120I	GGNCC	3 cut(s)	93, 131, 493
BmiI	GGNNCC	2 cut(s)	298, 495
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	198, 490
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	210, 471, 618
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	210, 471, 618
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	535
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	111, 132
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	479, 489
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	479, 489
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	111, 132
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	235, 565
Bsp19I	CCATGG	1 cut(s)	618
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	111, 132
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	298, 495
BspPI	GGATC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	210, 471, 618
BssMI	GATC	2 cut(s)	235, 565
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	169, 573
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	64, 109
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	238, 568
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	235, 565
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstSNI	TACGTA	1 cut(s)	22
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	535
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	111, 132
BtgI	CCRYGG	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	2 cut(s)	224, 387
BtsIMutI	CAGTG	2 cut(s)	224, 387
Cac8I	GCNNGC	2 cut(s)	64, 109
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	3 cut(s)	93, 131, 493
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	3 cut(s)	19, 394, 574
CviAII	CATG	4 cut(s)	59, 118, 505, 619
CviJI	RGCY	6 cut(s)	29, 107, 111, 132, 142, 638
CviKI_1	RGCY	6 cut(s)	29, 107, 111, 132, 142, 638
CviQI	GTAC	3 cut(s)	19, 394, 574
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	237, 567
DpnII	GATC	2 cut(s)	235, 565
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Ecl136II	GAGCTC	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	93, 493
Eco53kI	GAGCTC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	4 cut(s)	62, 121, 508, 622
FaqI	GGGAC	2 cut(s)	479, 489
FatI	CATG	4 cut(s)	58, 117, 504, 618
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	524
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	111, 132
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	62, 121, 508, 622
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	51, 80, 253, 417
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	199, 607
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	422, 472
Hpy188III	TCNNGA	3 cut(s)	233, 414, 482
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	2 cut(s)	169, 573
HpyCH4IV	ACGT	2 cut(s)	11, 21
HpyCH4V	TGCA	2 cut(s)	518, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	2 cut(s)	11, 21
Hsp92II	CATG	4 cut(s)	62, 121, 508, 622
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	235, 565
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	2 cut(s)	198, 490
MaeII	ACGT	2 cut(s)	11, 21
MaeIII	GTNAC	3 cut(s)	22, 424, 545
MalI	GATC	2 cut(s)	237, 567
MboI	GATC	2 cut(s)	235, 565
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	85, 174, 272, 400
MmeI	TCCRAC	2 cut(s)	71, 408
MnlI	CCTC	6 cut(s)	136, 287, 312, 335, 466, 536
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	618
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	235, 565
NlaIII	CATG	4 cut(s)	62, 121, 508, 622
NlaIV	GGNNCC	2 cut(s)	298, 495
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	2 cut(s)	424, 545
NspV	TTCGAA	1 cut(s)	435
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	4 cut(s)	51, 80, 253, 417
PflMI	CCANNNNNTGG	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	525
Ppu21I	YACGTR	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	298, 495
PspPI	GGNCC	3 cut(s)	93, 131, 493
PstNI	CAGNNNCTG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	3 cut(s)	20, 395, 575
RsaNI	GTAC	3 cut(s)	19, 394, 574
RseI	CAYNNNNRTG	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	2 cut(s)	235, 565
Sau96I	GGNCC	3 cut(s)	93, 131, 493
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	198, 490
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	2 cut(s)	93, 493
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SnaBI	TACGTA	1 cut(s)	22
Sse9I	AATT	4 cut(s)	85, 174, 272, 400
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	2 cut(s)	553, 645
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	2 cut(s)	169, 573
TaiI	ACGT	2 cut(s)	14, 24
TaqI	TCGA	2 cut(s)	171, 435
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	4 cut(s)	85, 174, 272, 400
TfiI	GAWTC	4 cut(s)	51, 80, 253, 417
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	224, 394
TseFI	GTSAC	2 cut(s)	424, 545
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	2 cut(s)	424, 545
TspDTI	ATGAA	5 cut(s)	43, 47, 134, 380, 461
TspRI	CASTG	2 cut(s)	224, 394
Van91I	CCANNNNNTGG	1 cut(s)	510
VpaK11BI	GGWCC	2 cut(s)	93, 493
XapI	RAATTY	2 cut(s)	174, 272
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.