Rh6BG049200

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
8072924 .. 8093291
20368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG049200.1

Sequence Viewer

Length: 1722 bp
ATGAATGGGATACAATACAATCTGCTTCTGGTGTTATGCACTACTATTTTTTCAGGGTTTGAAGTTGAAGCCTTACCCTATGATTACTCAGCAAGTATAGAGTGTTTAGCAAATCCTCAGAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACACAGAATCACAGGGTAACAAATTCCTCGTGGCTCATAGTCGAATTCAACCGCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACATTTTCTGCTTGGATAAAAGTGAGTATTGGTAGTGACGTTCCAGTAGCAGCTACTTTCAAGACAGCTTCTGGATTCAAACGTGCTGGTGAGATCATTGCAGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTAACAGTTGAAGCTTCAGGCGCTGCGGAGCTCTACTTTGAGAGCAAGAACACCTCCGTTGAGATCTGGGTTGACAACATCTCGTTGCAAGCATTCACCGAAAAGGAATGGAAGTTTCATCAAGATCGAAGCATTGCCAAGAATCGTAAGAGCAAAGTGCACATCCAAGTAGTTGATGCAGAAGGAAATCCTCTGCCAAATGCAACTATCTCCCTCCAACAAAACGTTCCAAGTTTCCCTTTTGGTTGTTCCATTACCAAGCTCATCCTCAACAACCCTGCCCACCAAAATTGGTTCATGTCAAGGTTCACAGTAACAACATTTGGGGATGAAATGAAATGGTACAGTACAGAGAGTATCCAGGGACGTGAGGACTACTCAGTAGCTGATTCCATGCTTCAGTTTGCAGAAGAAAACAACATTGCAGTCAGAGGCCACAATGTGTTCTGGGATGATCCGCAATACCAACTCAGTTGGGTCAAATCACTCGATACACATCAACTTATTAATGCAACTTACAAGAGGCTAAATTCTATCATGCAGAGATATAAAAGCAAGCTCATTGCCTGGGATGTTGTTAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAACAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGAAACCCCCTTGTTCCTGAATGATTTTAATACCATTGAAGAGAGCAGAGATGGAGCATCCATGCCGGCTATGTACCTTCGAAAGCTCAGAGAGATTCAGAGCTTCCCAGGCAACAATGGAGGACGGTTTGGGATTGGGCTTGAATCTCATTTCAATAGTAGTACTCCAAACCTTCCCTACATAAGAGCTTCTCTCGATACCCTTGGTGTTGCAAATGTGCCCATTTGGATCACTGAATTGGACGTGGCAAGCCATCTCGATCAGCCATTTTACTTGAAGCAGGTTCTAAGAGAGTTGCATTCTCACCCTCATATTCAAGGAATCATTATGTGGGCTGGACGGGGACCGAAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTCAACAACTTGCCAACTGGTGACGTTGTGGACAAGTTACTGCAGGAATGGGGTTATAGGAGCTCGGCTTCTTTCACAGCAAATGCCAATGGTTTCTTTGAGGCCTCTCTTCCCCATGGAGATTATGACATGAAGATCAGTCATTCTTCAGCGACGCATTCATCCATGGTTCACAAATTGAATGTGGCATCAATTACTATGTCTCTCCAACTTTCTGTTTGA

Protein Analysis

573

Amino Acids

64.47

Weight (kDa)

6.32

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 48 - 166 2.4e-07 Carbohydrate binding domain
Glyco_hydro_10 PF00331 228 - 484 9.8e-37 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 149, 1092
Acc36I ACCTGC 1 cut(s) 1387
AciI CCGC 3 cut(s) 263, 473, 905
AclI AACGTT 1 cut(s) 672
AclWI GGATC 2 cut(s) 896, 1352
AcsI RAATTY 5 cut(s) 233, 255, 976, 1033, 1045
AcuI CTGAAG 3 cut(s) 447, 830, 1632
AdeI CACNNNGTG 1 cut(s) 889
AfaI GTAC 4 cut(s) 791, 796, 1190, 1279
AfiI CCNNNNNNNGG 1 cut(s) 131
AjiI CACGTC 2 cut(s) 815, 1360
AjnI CCWGG 3 cut(s) 807, 1013, 1222
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
Alw21I GWGCWC 3 cut(s) 480, 609, 1565
Alw26I GTCTC 2 cut(s) 282, 1707
Alw44I GTGCAC 1 cut(s) 605
AlwI GGATC 2 cut(s) 896, 1352
AlwNI CAGNNNCTG 3 cut(s) 383, 470, 833
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 2 cut(s) 880, 1602
ApaLI GTGCAC 1 cut(s) 605
ApeKI GCWGC 2 cut(s) 362, 470
ApoI RAATTY 5 cut(s) 233, 255, 976, 1033, 1045
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AseI ATTAAT 1 cut(s) 954
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 429, 1460
AsuHPI GGTGA 4 cut(s) 413, 535, 1412, 1532
AsuII TTCGAA 1 cut(s) 1195
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 429, 1460
BaeGI GKGCMC 2 cut(s) 609, 1338
BanII GRGCYC 2 cut(s) 480, 1565
BauI CACGAG 1 cut(s) 239
Bbv12I GWGCWC 3 cut(s) 480, 609, 1565
BbvI GCAGC 2 cut(s) 374, 457
BccI CCATC 6 cut(s) 161, 174, 1057, 1106, 1160, 1377
BciT130I CCWGG 3 cut(s) 809, 1015, 1224
BciVI GTATCC 2 cut(s) 3, 815
BcoDI GTCTC 2 cut(s) 282, 1707
BfmI CTRYAG 2 cut(s) 206, 1541
BfoI RGCGCY 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 1387
BfuI GTATCC 2 cut(s) 3, 815
BglII AGATCT 1 cut(s) 510
BisI GCNGC 2 cut(s) 363, 471
BlsI GCNGC 2 cut(s) 364, 472
BmcAI AGTACT 1 cut(s) 1279
Bme1390I CCNGG 3 cut(s) 809, 1015, 1224
Bme18I GGWCC 2 cut(s) 429, 1460
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 2 cut(s) 815, 1360
BmgT120I GGNCC 2 cut(s) 429, 1460
BmiI GGNNCC 1 cut(s) 1461
BmrFI CCNGG 3 cut(s) 809, 1015, 1224
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 3 cut(s) 613, 1181, 1697
BmuI ACTGGG 1 cut(s) 1105
BplI GAGNNNNNCTC 4 cut(s) 809, 841, 1293, 1325
Bpu14I TTCGAA 1 cut(s) 1195
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 942
BsaJI CCNNGG 6 cut(s) 808, 1014, 1222, 1318, 1615, 1665
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 1180
Bse1I ACTGG 3 cut(s) 356, 1100, 1522
Bse3DI GCAATG 4 cut(s) 408, 579, 867, 1008
Bse8I GATNNNNATC 1 cut(s) 942
BseBI CCWGG 3 cut(s) 809, 1015, 1224
BseDI CCNNGG 6 cut(s) 808, 1014, 1222, 1318, 1615, 1665
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 4 cut(s) 408, 579, 867, 1008
BseMII CTCAG 5 cut(s) 102, 131, 840, 931, 1216
BseNI ACTGG 3 cut(s) 356, 1100, 1522
BseSI GKGCMC 2 cut(s) 609, 1338
BseXI GCAGC 2 cut(s) 374, 457
BshFI GGCC 2 cut(s) 882, 1604
BsiHKAI GWGCWC 3 cut(s) 480, 609, 1565
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 1181
BslFI GGGAC 2 cut(s) 825, 1473
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 282, 1707
BsmFI GGGAC 2 cut(s) 825, 1473
BsmI GAATGC 3 cut(s) 539, 1414, 1657
BsnI GGCC 2 cut(s) 882, 1604
BsoBI CYCGRG 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 1195
Bsp1286I GDGCHC 4 cut(s) 480, 609, 1338, 1565
Bsp143I GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
Bsp19I CCATGG 2 cut(s) 1615, 1665
BspACI CCGC 3 cut(s) 263, 473, 905
BspANI GGCC 2 cut(s) 882, 1604
BspCNI CTCAG 5 cut(s) 101, 130, 839, 930, 1215
BspLI GGNNCC 1 cut(s) 1461
BspMAI CTGCAG 1 cut(s) 1545
BspMI ACCTGC 1 cut(s) 1387
BspPI GGATC 2 cut(s) 896, 1352
BspT104I TTCGAA 1 cut(s) 1195
BsrDI GCAATG 4 cut(s) 408, 579, 867, 1008
BsrFI RCCGGY 1 cut(s) 1180
BsrI ACTGG 3 cut(s) 356, 1100, 1522
BssAI RCCGGY 1 cut(s) 1180
BssECI CCNNGG 6 cut(s) 808, 1014, 1222, 1318, 1615, 1665
BssMI GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 3 cut(s) 1318, 1615, 1665
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 809, 1015, 1224
Bst4CI ACNGT 4 cut(s) 454, 760, 794, 1242
Bst6I CTCTTC 2 cut(s) 1149, 1614
BstBI TTCGAA 1 cut(s) 1195
BstC8I GCNNGC 4 cut(s) 537, 1004, 1182, 1366
BstDEI CTNAG 6 cut(s) 88, 117, 826, 917, 1202, 1403
BstDSI CCRYGG 2 cut(s) 1615, 1665
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 7 cut(s) 408, 513, 574, 904, 1347, 1378, 1638
BstMAI GTCTC 2 cut(s) 282, 1707
BstMBI GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
BstMWI GCNNNNNNNGC 3 cut(s) 467, 1106, 1224
BstNI CCWGG 3 cut(s) 809, 1015, 1224
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 807, 1013, 1222
BstSFI CTRYAG 2 cut(s) 206, 1541
BstSLI GKGCMC 2 cut(s) 609, 1338
BstV1I GCAGC 2 cut(s) 374, 457
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BsuI GTATCC 2 cut(s) 3, 815
BsuRI GGCC 2 cut(s) 882, 1604
BtgI CCRYGG 2 cut(s) 1615, 1665
BtrI CACGTC 2 cut(s) 815, 1360
BtsIMutI CAGTG 1 cut(s) 1347
BveI ACCTGC 1 cut(s) 1387
Cac8I GCNNGC 4 cut(s) 537, 1004, 1182, 1366
CaiI CAGNNNCTG 3 cut(s) 383, 470, 833
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 1180
Cfr13I GGNCC 2 cut(s) 429, 1460
CseI GACGC 1 cut(s) 1663
Csp6I GTAC 4 cut(s) 790, 795, 1189, 1278
CspCI CAANNNNNGTGG 4 cut(s) 115, 150, 719, 754
CviQI GTAC 4 cut(s) 790, 795, 1189, 1278
DdeI CTNAG 6 cut(s) 88, 117, 826, 917, 1202, 1403
DpnI GATC 7 cut(s) 407, 512, 573, 903, 1346, 1377, 1637
DpnII GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
DraIII CACNNNGTG 1 cut(s) 889
Eam1104I CTCTTC 2 cut(s) 1149, 1614
EarI CTCTTC 2 cut(s) 1149, 1614
Ecl136II GAGCTC 2 cut(s) 478, 1563
Eco130I CCWWGG 3 cut(s) 1318, 1615, 1665
Eco147I AGGCCT 1 cut(s) 1604
Eco24I GRGCYC 2 cut(s) 480, 1565
Eco47I GGWCC 2 cut(s) 429, 1460
Eco53kI GAGCTC 2 cut(s) 478, 1563
Eco57I CTGAAG 3 cut(s) 447, 830, 1632
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 2 cut(s) 478, 1563
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 3 cut(s) 807, 1013, 1222
EcoT14I CCWWGG 3 cut(s) 1318, 1615, 1665
EcoT38I GRGCYC 2 cut(s) 480, 1565
ErhI CCWWGG 3 cut(s) 1318, 1615, 1665
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 670, 702
FaqI GGGAC 2 cut(s) 825, 1473
Fnu4HI GCNGC 2 cut(s) 363, 471
FriOI GRGCYC 2 cut(s) 480, 1565
Fsp4HI GCNGC 2 cut(s) 363, 471
GlaI GCGC 1 cut(s) 469
GluI GCNGC 2 cut(s) 363, 471
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 882, 1604
HapII CCGG 1 cut(s) 1181
HgaI GACGC 1 cut(s) 1663
HhaI GCGC 1 cut(s) 470
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 2 cut(s) 520, 1027
HindII GTYRAC 2 cut(s) 520, 1027
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 8 cut(s) 218, 387, 416, 589, 836, 1210, 1259, 1437
HpaI GTTAAC 1 cut(s) 1027
HpaII CCGG 1 cut(s) 1181
HphI GGTGA 4 cut(s) 413, 535, 1412, 1532
Hpy166II GTNNAC 7 cut(s) 289, 520, 607, 756, 1027, 1531, 1672
Hpy188I TCNGA 4 cut(s) 120, 878, 1205, 1215
Hpy188III TCNNGA 6 cut(s) 373, 384, 569, 1132, 1310, 1373
Hpy8I GTNNAC 7 cut(s) 289, 520, 607, 756, 1027, 1531, 1672
Hpy99I CGWCG 1 cut(s) 1657
HpyAV CCTTC 3 cut(s) 623, 1202, 1298
HpyCH4III ACNGT 4 cut(s) 454, 760, 794, 1242
HpyCH4IV ACGT 6 cut(s) 351, 394, 672, 814, 1359, 1524
HpyF10VI GCNNNNNNNGC 3 cut(s) 467, 1106, 1224
HpyF3I CTNAG 6 cut(s) 88, 117, 826, 917, 1202, 1403
HpySE526I ACGT 6 cut(s) 351, 394, 672, 814, 1359, 1524
HspAI GCGC 1 cut(s) 468
KroI GCCGGC 1 cut(s) 1180
KroNI GCCGGC 1 cut(s) 1182
KspAI GTTAAC 1 cut(s) 1027
Kzo9I GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
LmnI GCTCC 3 cut(s) 475, 1169, 1560
Lsp1109I GCAGC 2 cut(s) 374, 457
LweI GCATC 3 cut(s) 613, 1181, 1697
MaeII ACGT 6 cut(s) 351, 394, 672, 814, 1359, 1524
MaeIII GTNAC 7 cut(s) 227, 299, 347, 760, 1472, 1520, 1536
MalI GATC 7 cut(s) 407, 512, 573, 903, 1346, 1377, 1637
MboI GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
MboII GAAGA 5 cut(s) 869, 1166, 1601, 1638, 1645
MflI RGATCY 1 cut(s) 510
MhlI GDGCHC 4 cut(s) 480, 609, 1338, 1565
MmeI TCCRAC 1 cut(s) 688
MroNI GCCGGC 1 cut(s) 1180
MseI TTAA 6 cut(s) 161, 173, 954, 1026, 1104, 1143
MspI CCGG 1 cut(s) 1181
MspR9I CCNGG 3 cut(s) 809, 1015, 1224
Mva1269I GAATGC 3 cut(s) 539, 1414, 1657
MvaI CCWGG 3 cut(s) 809, 1015, 1224
MwoI GCNNNNNNNGC 3 cut(s) 467, 1106, 1224
NaeI GCCGGC 1 cut(s) 1182
NcoI CCATGG 2 cut(s) 1615, 1665
NdeII GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
NgoMIV GCCGGC 1 cut(s) 1180
NlaIV GGNNCC 1 cut(s) 1461
NmeAIII GCCGAG 1 cut(s) 1544
NmuCI GTSAC 3 cut(s) 299, 347, 1520
NspI RCATGY 1 cut(s) 277
NspV TTCGAA 1 cut(s) 1195
PceI AGGCCT 1 cut(s) 1604
PctI GAATGC 3 cut(s) 539, 1414, 1657
PdiI GCCGGC 1 cut(s) 1182
PfeI GAWTC 8 cut(s) 218, 387, 416, 589, 836, 1210, 1259, 1437
PkrI GCNGC 2 cut(s) 364, 472
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 2 cut(s) 149, 1092
Psp124BI GAGCTC 2 cut(s) 480, 1565
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 3 cut(s) 807, 1013, 1222
PspGI CCWGG 3 cut(s) 807, 1013, 1222
PspN4I GGNNCC 1 cut(s) 1461
PspPI GGNCC 2 cut(s) 429, 1460
PstI CTGCAG 1 cut(s) 1545
PstNI CAGNNNCTG 3 cut(s) 383, 470, 833
PsuI RGATCY 1 cut(s) 510
RsaI GTAC 4 cut(s) 791, 796, 1190, 1279
RsaNI GTAC 4 cut(s) 790, 795, 1189, 1278
SacI GAGCTC 2 cut(s) 480, 1565
SaqAI TTAA 6 cut(s) 161, 173, 954, 1026, 1104, 1143
SatI GCNGC 2 cut(s) 363, 471
Sau3AI GATC 7 cut(s) 405, 510, 571, 901, 1344, 1375, 1635
Sau96I GGNCC 2 cut(s) 429, 1460
ScaI AGTACT 1 cut(s) 1279
ScrFI CCNGG 3 cut(s) 809, 1015, 1224
SduI GDGCHC 4 cut(s) 480, 609, 1338, 1565
SfaNI GCATC 3 cut(s) 613, 1181, 1697
SfcI CTRYAG 2 cut(s) 206, 1541
SfuI TTCGAA 1 cut(s) 1195
SinI GGWCC 2 cut(s) 429, 1460
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SseBI AGGCCT 1 cut(s) 1604
SsiI CCGC 3 cut(s) 263, 473, 905
SstI GAGCTC 2 cut(s) 480, 1565
StuI AGGCCT 1 cut(s) 1604
StyD4I CCNGG 3 cut(s) 807, 1013, 1222
StyI CCWWGG 3 cut(s) 1318, 1615, 1665
TaaI ACNGT 4 cut(s) 454, 760, 794, 1242
TaiI ACGT 6 cut(s) 354, 397, 675, 817, 1362, 1527
TaqI TCGA 6 cut(s) 253, 574, 936, 1195, 1311, 1374
TaqII GACCGA 1 cut(s) 1477
TatI WGTACW 2 cut(s) 794, 1277
TfiI GAWTC 8 cut(s) 218, 387, 416, 589, 836, 1210, 1259, 1437
Tru1I TTAA 6 cut(s) 161, 173, 954, 1026, 1104, 1143
Tru9I TTAA 6 cut(s) 161, 173, 954, 1026, 1104, 1143
TscAI CASTG 1 cut(s) 1354
TseFI GTSAC 3 cut(s) 299, 347, 1520
TseI GCWGC 2 cut(s) 362, 470
Tsp45I GTSAC 3 cut(s) 299, 347, 1520
TspDTI ATGAA 8 cut(s) 17, 554, 733, 792, 797, 1509, 1646, 1650
TspGWI ACGGA 1 cut(s) 493
TspRI CASTG 1 cut(s) 1354
VneI GTGCAC 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 429, 1460
VspI ATTAAT 1 cut(s) 954
XapI RAATTY 5 cut(s) 233, 255, 976, 1033, 1045
XceI RCATGY 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.