Endo-1,4-beta-xylanase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33830 AT4G33840 AT4G33860 |
| fragaria_vesca | FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060 |
| malus_domestica | MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1 |
| prunus_persica | Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851 |
| rosa_laevigata | RLG00000015059 RLG00000015061 |
| rosa_multiflora | Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00212390 |
| rosa_rugosa | Rorug05G0417000 Rorug05G0539100 |
| rosa_samantha | Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700 |
| rosa_wichuraiana | Rw5G043950 Rw6G004970 Rw6G004990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 149, 1092 |
| Acc36I | ACCTGC | 1 cut(s) | 1387 |
| AciI | CCGC | 3 cut(s) | 263, 473, 905 |
| AclI | AACGTT | 1 cut(s) | 672 |
| AclWI | GGATC | 2 cut(s) | 896, 1352 |
| AcsI | RAATTY | 5 cut(s) | 233, 255, 976, 1033, 1045 |
| AcuI | CTGAAG | 3 cut(s) | 447, 830, 1632 |
| AdeI | CACNNNGTG | 1 cut(s) | 889 |
| AfaI | GTAC | 4 cut(s) | 791, 796, 1190, 1279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AjiI | CACGTC | 2 cut(s) | 815, 1360 |
| AjnI | CCWGG | 3 cut(s) | 807, 1013, 1222 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 657, 689 |
| Alw21I | GWGCWC | 3 cut(s) | 480, 609, 1565 |
| Alw26I | GTCTC | 2 cut(s) | 282, 1707 |
| Alw44I | GTGCAC | 1 cut(s) | 605 |
| AlwI | GGATC | 2 cut(s) | 896, 1352 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 383, 470, 833 |
| Ama87I | CYCGRG | 1 cut(s) | 155 |
| AoxI | GGCC | 2 cut(s) | 880, 1602 |
| ApaLI | GTGCAC | 1 cut(s) | 605 |
| ApeKI | GCWGC | 2 cut(s) | 362, 470 |
| ApoI | RAATTY | 5 cut(s) | 233, 255, 976, 1033, 1045 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 413, 445 |
| AseI | ATTAAT | 1 cut(s) | 954 |
| AspLEI | GCGC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 2 cut(s) | 429, 1460 |
| AsuHPI | GGTGA | 4 cut(s) | 413, 535, 1412, 1532 |
| AsuII | TTCGAA | 1 cut(s) | 1195 |
| AvaI | CYCGRG | 1 cut(s) | 155 |
| AvaII | GGWCC | 2 cut(s) | 429, 1460 |
| BaeGI | GKGCMC | 2 cut(s) | 609, 1338 |
| BanII | GRGCYC | 2 cut(s) | 480, 1565 |
| BauI | CACGAG | 1 cut(s) | 239 |
| Bbv12I | GWGCWC | 3 cut(s) | 480, 609, 1565 |
| BbvI | GCAGC | 2 cut(s) | 374, 457 |
| BccI | CCATC | 6 cut(s) | 161, 174, 1057, 1106, 1160, 1377 |
| BciT130I | CCWGG | 3 cut(s) | 809, 1015, 1224 |
| BciVI | GTATCC | 2 cut(s) | 3, 815 |
| BcoDI | GTCTC | 2 cut(s) | 282, 1707 |
| BfmI | CTRYAG | 2 cut(s) | 206, 1541 |
| BfoI | RGCGCY | 1 cut(s) | 471 |
| BfuAI | ACCTGC | 1 cut(s) | 1387 |
| BfuI | GTATCC | 2 cut(s) | 3, 815 |
| BglII | AGATCT | 1 cut(s) | 510 |
| BisI | GCNGC | 2 cut(s) | 363, 471 |
| BlsI | GCNGC | 2 cut(s) | 364, 472 |
| BmcAI | AGTACT | 1 cut(s) | 1279 |
| Bme1390I | CCNGG | 3 cut(s) | 809, 1015, 1224 |
| Bme18I | GGWCC | 2 cut(s) | 429, 1460 |
| BmeT110I | CYCGRG | 1 cut(s) | 155 |
| BmgBI | CACGTC | 2 cut(s) | 815, 1360 |
| BmgT120I | GGNCC | 2 cut(s) | 429, 1460 |
| BmiI | GGNNCC | 1 cut(s) | 1461 |
| BmrFI | CCNGG | 3 cut(s) | 809, 1015, 1224 |
| BmrI | ACTGGG | 1 cut(s) | 1105 |
| BmsI | GCATC | 3 cut(s) | 613, 1181, 1697 |
| BmuI | ACTGGG | 1 cut(s) | 1105 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 809, 841, 1293, 1325 |
| Bpu14I | TTCGAA | 1 cut(s) | 1195 |
| BpuEI | CTTGAG | 1 cut(s) | 422 |
| BsaBI | GATNNNNATC | 1 cut(s) | 942 |
| BsaJI | CCNNGG | 6 cut(s) | 808, 1014, 1222, 1318, 1615, 1665 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| Bse118I | RCCGGY | 1 cut(s) | 1180 |
| Bse1I | ACTGG | 3 cut(s) | 356, 1100, 1522 |
| Bse3DI | GCAATG | 4 cut(s) | 408, 579, 867, 1008 |
| Bse8I | GATNNNNATC | 1 cut(s) | 942 |
| BseBI | CCWGG | 3 cut(s) | 809, 1015, 1224 |
| BseDI | CCNNGG | 6 cut(s) | 808, 1014, 1222, 1318, 1615, 1665 |
| BseJI | GATNNNNATC | 1 cut(s) | 942 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMI | GCAATG | 4 cut(s) | 408, 579, 867, 1008 |
| BseMII | CTCAG | 5 cut(s) | 102, 131, 840, 931, 1216 |
| BseNI | ACTGG | 3 cut(s) | 356, 1100, 1522 |
| BseSI | GKGCMC | 2 cut(s) | 609, 1338 |
| BseXI | GCAGC | 2 cut(s) | 374, 457 |
| BshFI | GGCC | 2 cut(s) | 882, 1604 |
| BsiHKAI | GWGCWC | 3 cut(s) | 480, 609, 1565 |
| BsiHKCI | CYCGRG | 1 cut(s) | 155 |
| BsiSI | CCGG | 1 cut(s) | 1181 |
| BslFI | GGGAC | 2 cut(s) | 825, 1473 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 2 cut(s) | 282, 1707 |
| BsmFI | GGGAC | 2 cut(s) | 825, 1473 |
| BsmI | GAATGC | 3 cut(s) | 539, 1414, 1657 |
| BsnI | GGCC | 2 cut(s) | 882, 1604 |
| BsoBI | CYCGRG | 1 cut(s) | 155 |
| Bsp119I | TTCGAA | 1 cut(s) | 1195 |
| Bsp1286I | GDGCHC | 4 cut(s) | 480, 609, 1338, 1565 |
| Bsp143I | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| Bsp19I | CCATGG | 2 cut(s) | 1615, 1665 |
| BspACI | CCGC | 3 cut(s) | 263, 473, 905 |
| BspANI | GGCC | 2 cut(s) | 882, 1604 |
| BspCNI | CTCAG | 5 cut(s) | 101, 130, 839, 930, 1215 |
| BspLI | GGNNCC | 1 cut(s) | 1461 |
| BspMAI | CTGCAG | 1 cut(s) | 1545 |
| BspMI | ACCTGC | 1 cut(s) | 1387 |
| BspPI | GGATC | 2 cut(s) | 896, 1352 |
| BspT104I | TTCGAA | 1 cut(s) | 1195 |
| BsrDI | GCAATG | 4 cut(s) | 408, 579, 867, 1008 |
| BsrFI | RCCGGY | 1 cut(s) | 1180 |
| BsrI | ACTGG | 3 cut(s) | 356, 1100, 1522 |
| BssAI | RCCGGY | 1 cut(s) | 1180 |
| BssECI | CCNNGG | 6 cut(s) | 808, 1014, 1222, 1318, 1615, 1665 |
| BssMI | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| BssSI | CACGAG | 1 cut(s) | 239 |
| BssT1I | CCWWGG | 3 cut(s) | 1318, 1615, 1665 |
| Bst2BI | CACGAG | 1 cut(s) | 239 |
| Bst2UI | CCWGG | 3 cut(s) | 809, 1015, 1224 |
| Bst4CI | ACNGT | 4 cut(s) | 454, 760, 794, 1242 |
| Bst6I | CTCTTC | 2 cut(s) | 1149, 1614 |
| BstBI | TTCGAA | 1 cut(s) | 1195 |
| BstC8I | GCNNGC | 4 cut(s) | 537, 1004, 1182, 1366 |
| BstDEI | CTNAG | 6 cut(s) | 88, 117, 826, 917, 1202, 1403 |
| BstDSI | CCRYGG | 2 cut(s) | 1615, 1665 |
| BstH2I | RGCGCY | 1 cut(s) | 471 |
| BstHHI | GCGC | 1 cut(s) | 470 |
| BstKTI | GATC | 7 cut(s) | 408, 513, 574, 904, 1347, 1378, 1638 |
| BstMAI | GTCTC | 2 cut(s) | 282, 1707 |
| BstMBI | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 467, 1106, 1224 |
| BstNI | CCWGG | 3 cut(s) | 809, 1015, 1224 |
| BstNSI | RCATGY | 1 cut(s) | 277 |
| BstSCI | CCNGG | 3 cut(s) | 807, 1013, 1222 |
| BstSFI | CTRYAG | 2 cut(s) | 206, 1541 |
| BstSLI | GKGCMC | 2 cut(s) | 609, 1338 |
| BstV1I | GCAGC | 2 cut(s) | 374, 457 |
| BstX2I | RGATCY | 1 cut(s) | 510 |
| BstYI | RGATCY | 1 cut(s) | 510 |
| BsuI | GTATCC | 2 cut(s) | 3, 815 |
| BsuRI | GGCC | 2 cut(s) | 882, 1604 |
| BtgI | CCRYGG | 2 cut(s) | 1615, 1665 |
| BtrI | CACGTC | 2 cut(s) | 815, 1360 |
| BtsIMutI | CAGTG | 1 cut(s) | 1347 |
| BveI | ACCTGC | 1 cut(s) | 1387 |
| Cac8I | GCNNGC | 4 cut(s) | 537, 1004, 1182, 1366 |
| CaiI | CAGNNNCTG | 3 cut(s) | 383, 470, 833 |
| CfoI | GCGC | 1 cut(s) | 470 |
| Cfr10I | RCCGGY | 1 cut(s) | 1180 |
| Cfr13I | GGNCC | 2 cut(s) | 429, 1460 |
| CseI | GACGC | 1 cut(s) | 1663 |
| Csp6I | GTAC | 4 cut(s) | 790, 795, 1189, 1278 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 115, 150, 719, 754 |
| CviQI | GTAC | 4 cut(s) | 790, 795, 1189, 1278 |
| DdeI | CTNAG | 6 cut(s) | 88, 117, 826, 917, 1202, 1403 |
| DpnI | GATC | 7 cut(s) | 407, 512, 573, 903, 1346, 1377, 1637 |
| DpnII | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| DraIII | CACNNNGTG | 1 cut(s) | 889 |
| Eam1104I | CTCTTC | 2 cut(s) | 1149, 1614 |
| EarI | CTCTTC | 2 cut(s) | 1149, 1614 |
| Ecl136II | GAGCTC | 2 cut(s) | 478, 1563 |
| Eco130I | CCWWGG | 3 cut(s) | 1318, 1615, 1665 |
| Eco147I | AGGCCT | 1 cut(s) | 1604 |
| Eco24I | GRGCYC | 2 cut(s) | 480, 1565 |
| Eco47I | GGWCC | 2 cut(s) | 429, 1460 |
| Eco53kI | GAGCTC | 2 cut(s) | 478, 1563 |
| Eco57I | CTGAAG | 3 cut(s) | 447, 830, 1632 |
| Eco88I | CYCGRG | 1 cut(s) | 155 |
| EcoICRI | GAGCTC | 2 cut(s) | 478, 1563 |
| EcoRI | GAATTC | 1 cut(s) | 255 |
| EcoRII | CCWGG | 3 cut(s) | 807, 1013, 1222 |
| EcoT14I | CCWWGG | 3 cut(s) | 1318, 1615, 1665 |
| EcoT38I | GRGCYC | 2 cut(s) | 480, 1565 |
| ErhI | CCWWGG | 3 cut(s) | 1318, 1615, 1665 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 275, 307, 670, 702 |
| FaqI | GGGAC | 2 cut(s) | 825, 1473 |
| Fnu4HI | GCNGC | 2 cut(s) | 363, 471 |
| FriOI | GRGCYC | 2 cut(s) | 480, 1565 |
| Fsp4HI | GCNGC | 2 cut(s) | 363, 471 |
| GlaI | GCGC | 1 cut(s) | 469 |
| GluI | GCNGC | 2 cut(s) | 363, 471 |
| HaeII | RGCGCY | 1 cut(s) | 471 |
| HaeIII | GGCC | 2 cut(s) | 882, 1604 |
| HapII | CCGG | 1 cut(s) | 1181 |
| HgaI | GACGC | 1 cut(s) | 1663 |
| HhaI | GCGC | 1 cut(s) | 470 |
| Hin6I | GCGC | 1 cut(s) | 468 |
| HinP1I | GCGC | 1 cut(s) | 468 |
| HincII | GTYRAC | 2 cut(s) | 520, 1027 |
| HindII | GTYRAC | 2 cut(s) | 520, 1027 |
| HindIII | AAGCTT | 1 cut(s) | 459 |
| HinfI | GANTC | 8 cut(s) | 218, 387, 416, 589, 836, 1210, 1259, 1437 |
| HpaI | GTTAAC | 1 cut(s) | 1027 |
| HpaII | CCGG | 1 cut(s) | 1181 |
| HphI | GGTGA | 4 cut(s) | 413, 535, 1412, 1532 |
| Hpy166II | GTNNAC | 7 cut(s) | 289, 520, 607, 756, 1027, 1531, 1672 |
| Hpy188I | TCNGA | 4 cut(s) | 120, 878, 1205, 1215 |
| Hpy188III | TCNNGA | 6 cut(s) | 373, 384, 569, 1132, 1310, 1373 |
| Hpy8I | GTNNAC | 7 cut(s) | 289, 520, 607, 756, 1027, 1531, 1672 |
| Hpy99I | CGWCG | 1 cut(s) | 1657 |
| HpyAV | CCTTC | 3 cut(s) | 623, 1202, 1298 |
| HpyCH4III | ACNGT | 4 cut(s) | 454, 760, 794, 1242 |
| HpyCH4IV | ACGT | 6 cut(s) | 351, 394, 672, 814, 1359, 1524 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 467, 1106, 1224 |
| HpyF3I | CTNAG | 6 cut(s) | 88, 117, 826, 917, 1202, 1403 |
| HpySE526I | ACGT | 6 cut(s) | 351, 394, 672, 814, 1359, 1524 |
| HspAI | GCGC | 1 cut(s) | 468 |
| KroI | GCCGGC | 1 cut(s) | 1180 |
| KroNI | GCCGGC | 1 cut(s) | 1182 |
| KspAI | GTTAAC | 1 cut(s) | 1027 |
| Kzo9I | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| LmnI | GCTCC | 3 cut(s) | 475, 1169, 1560 |
| Lsp1109I | GCAGC | 2 cut(s) | 374, 457 |
| LweI | GCATC | 3 cut(s) | 613, 1181, 1697 |
| MaeII | ACGT | 6 cut(s) | 351, 394, 672, 814, 1359, 1524 |
| MaeIII | GTNAC | 7 cut(s) | 227, 299, 347, 760, 1472, 1520, 1536 |
| MalI | GATC | 7 cut(s) | 407, 512, 573, 903, 1346, 1377, 1637 |
| MboI | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| MboII | GAAGA | 5 cut(s) | 869, 1166, 1601, 1638, 1645 |
| MflI | RGATCY | 1 cut(s) | 510 |
| MhlI | GDGCHC | 4 cut(s) | 480, 609, 1338, 1565 |
| MmeI | TCCRAC | 1 cut(s) | 688 |
| MroNI | GCCGGC | 1 cut(s) | 1180 |
| MseI | TTAA | 6 cut(s) | 161, 173, 954, 1026, 1104, 1143 |
| MspI | CCGG | 1 cut(s) | 1181 |
| MspR9I | CCNGG | 3 cut(s) | 809, 1015, 1224 |
| Mva1269I | GAATGC | 3 cut(s) | 539, 1414, 1657 |
| MvaI | CCWGG | 3 cut(s) | 809, 1015, 1224 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 467, 1106, 1224 |
| NaeI | GCCGGC | 1 cut(s) | 1182 |
| NcoI | CCATGG | 2 cut(s) | 1615, 1665 |
| NdeII | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| NgoMIV | GCCGGC | 1 cut(s) | 1180 |
| NlaIV | GGNNCC | 1 cut(s) | 1461 |
| NmeAIII | GCCGAG | 1 cut(s) | 1544 |
| NmuCI | GTSAC | 3 cut(s) | 299, 347, 1520 |
| NspI | RCATGY | 1 cut(s) | 277 |
| NspV | TTCGAA | 1 cut(s) | 1195 |
| PceI | AGGCCT | 1 cut(s) | 1604 |
| PctI | GAATGC | 3 cut(s) | 539, 1414, 1657 |
| PdiI | GCCGGC | 1 cut(s) | 1182 |
| PfeI | GAWTC | 8 cut(s) | 218, 387, 416, 589, 836, 1210, 1259, 1437 |
| PkrI | GCNGC | 2 cut(s) | 364, 472 |
| PshBI | ATTAAT | 1 cut(s) | 954 |
| PsiI | TTATAA | 2 cut(s) | 149, 1092 |
| Psp124BI | GAGCTC | 2 cut(s) | 480, 1565 |
| Psp1406I | AACGTT | 1 cut(s) | 672 |
| Psp6I | CCWGG | 3 cut(s) | 807, 1013, 1222 |
| PspGI | CCWGG | 3 cut(s) | 807, 1013, 1222 |
| PspN4I | GGNNCC | 1 cut(s) | 1461 |
| PspPI | GGNCC | 2 cut(s) | 429, 1460 |
| PstI | CTGCAG | 1 cut(s) | 1545 |
| PstNI | CAGNNNCTG | 3 cut(s) | 383, 470, 833 |
| PsuI | RGATCY | 1 cut(s) | 510 |
| RsaI | GTAC | 4 cut(s) | 791, 796, 1190, 1279 |
| RsaNI | GTAC | 4 cut(s) | 790, 795, 1189, 1278 |
| SacI | GAGCTC | 2 cut(s) | 480, 1565 |
| SaqAI | TTAA | 6 cut(s) | 161, 173, 954, 1026, 1104, 1143 |
| SatI | GCNGC | 2 cut(s) | 363, 471 |
| Sau3AI | GATC | 7 cut(s) | 405, 510, 571, 901, 1344, 1375, 1635 |
| Sau96I | GGNCC | 2 cut(s) | 429, 1460 |
| ScaI | AGTACT | 1 cut(s) | 1279 |
| ScrFI | CCNGG | 3 cut(s) | 809, 1015, 1224 |
| SduI | GDGCHC | 4 cut(s) | 480, 609, 1338, 1565 |
| SfaNI | GCATC | 3 cut(s) | 613, 1181, 1697 |
| SfcI | CTRYAG | 2 cut(s) | 206, 1541 |
| SfuI | TTCGAA | 1 cut(s) | 1195 |
| SinI | GGWCC | 2 cut(s) | 429, 1460 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| SseBI | AGGCCT | 1 cut(s) | 1604 |
| SsiI | CCGC | 3 cut(s) | 263, 473, 905 |
| SstI | GAGCTC | 2 cut(s) | 480, 1565 |
| StuI | AGGCCT | 1 cut(s) | 1604 |
| StyD4I | CCNGG | 3 cut(s) | 807, 1013, 1222 |
| StyI | CCWWGG | 3 cut(s) | 1318, 1615, 1665 |
| TaaI | ACNGT | 4 cut(s) | 454, 760, 794, 1242 |
| TaiI | ACGT | 6 cut(s) | 354, 397, 675, 817, 1362, 1527 |
| TaqI | TCGA | 6 cut(s) | 253, 574, 936, 1195, 1311, 1374 |
| TaqII | GACCGA | 1 cut(s) | 1477 |
| TatI | WGTACW | 2 cut(s) | 794, 1277 |
| TfiI | GAWTC | 8 cut(s) | 218, 387, 416, 589, 836, 1210, 1259, 1437 |
| Tru1I | TTAA | 6 cut(s) | 161, 173, 954, 1026, 1104, 1143 |
| Tru9I | TTAA | 6 cut(s) | 161, 173, 954, 1026, 1104, 1143 |
| TscAI | CASTG | 1 cut(s) | 1354 |
| TseFI | GTSAC | 3 cut(s) | 299, 347, 1520 |
| TseI | GCWGC | 2 cut(s) | 362, 470 |
| Tsp45I | GTSAC | 3 cut(s) | 299, 347, 1520 |
| TspDTI | ATGAA | 8 cut(s) | 17, 554, 733, 792, 797, 1509, 1646, 1650 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| TspRI | CASTG | 1 cut(s) | 1354 |
| VneI | GTGCAC | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 2 cut(s) | 429, 1460 |
| VspI | ATTAAT | 1 cut(s) | 954 |
| XapI | RAATTY | 5 cut(s) | 233, 255, 976, 1033, 1045 |
| XceI | RCATGY | 1 cut(s) | 277 |
| ZrmI | AGTACT | 1 cut(s) | 1279 |