Rh6DG043700

ubiquitin-dependent protein catabolic process

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
4678211 .. 4683853
5643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG043700.1

Sequence Viewer

Length: 1749 bp
ATGGTGAGACGAAGTCGACTTTTTGGTGATATTGAAGATGATGAAGGTGTTGGAGGTTCCAGCCACCCGGATGAGTATTTTGCAGGGTTTGAAGTTGAAGCCTTACCCTATGATTACTCAGCAAGTATAGAGTGTTTAGCAAATCCTCACAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACACAGAATCACAGGGTAACAAATTCCTTGTGGCTCATAGTCGGATTCAACCGCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACATTTTCTGCTTGGATACAAGCAAGTAGTGGCAGTAGCGTTCCAATAGCAGCTATTTTCAAGACAGCTTCTGGATTTATAAGTGCTGGTGAGATTATTGCGGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTCACTGTCAAGGCTTCAGGCGATGCCGACCTCTATTTCGAGAGCAAGAACACTTCTGTTGAGATTTCGGTTGACAGCATCTCATTGCAACCGTTCACCAAAAAGCAATGGAAGTCTCATCAAGATCAAAGCATTGCCAATAATCGTAAAACCAAGGTGCGAATCCAAGCAGTTGATGCACAAGGCAATCCTCTACCAAATGCTACAATCTCCATCCAACAAAAGGCTCCAAGTTTCCCTTTTGGTTGTTGTATGACCAATCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTCACGTCAAGGTTCAGAGTAACAACATTTGCTAACGAAATGAAATGGTATAGCACAGAGAATGTCCAGGGACGTGAGGACTACTCAGTGCCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCATAATGTGTTCTGGGATGATTCCCAGTACCAACTCGGTTGGGTCAAATCGCTCAATGAGCAACAACTTGAAAGTGCAACTAACAAGAGGCTAAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCTTGGGATGTTGTCAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGCAACCCCTTTGTTCTGGAATGACTTTAATACCATTGAGGATAGCAGAGATGAAGCAGCCTCTCCAGCTAAGTACCTTCAAAAGCTCAGAGATATACAAAGCTTTCCGGGTAATGAGGGCGGACGATATGGGATTGGGCTTGAGTCTCATTTCAATATTACTCCTAACATTCCTTACATACGAGCTTCTCTTGATACTCTTGGGGCTGCAAATGTGCCCATTTGGATCACAGAATTGGACGTAGCAGATCATCTTGATCAGCCAAGTATATTGGAGCAGCTTCTTAGAGAGTTGCATTCTCACCCTCAGATTCAAGGAATCATTATGTGGGCTGGACGGGGACTCCAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTTAACAACTTGCCAACCGGTGACGTTGTGGACAAGTTACTGAAGGAATGGGGTTATTGGAGCTCAGCTTCTTTCACAGCAGACTCCAATGGTTATTTTGAGGCCTCCCTTCCCCATGGAGATTATGACTTGAAGATCAGCCATTCTTCAGCCATAGATTCCTCCTTGGTTCACAAATTGAACGTGGCATCAACAACTAGGTCTCTGCAACTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

65.11

Weight (kDa)

5.91

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 58 - 176 8.1e-07 Carbohydrate binding domain
Glyco_hydro_10 PF00331 237 - 493 6.1e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 179, 422, 1122
AccI GTMKAC 1 cut(s) 16
AciI CCGC 3 cut(s) 293, 443, 1266
AclWI GGATC 1 cut(s) 1379
AcsI RAATTY 4 cut(s) 263, 1006, 1063, 1075
AcuI CTGAAG 5 cut(s) 477, 860, 1092, 1589, 1659
AfaI GTAC 2 cut(s) 941, 1220
AfiI CCNNNNNNNGG 2 cut(s) 161, 700
AgeI ACCGGT 1 cut(s) 1544
AjiI CACGTC 2 cut(s) 777, 845
AjnI CCWGG 1 cut(s) 837
Alw21I GWGCWC 1 cut(s) 1592
Alw26I GTCTC 5 cut(s) 312, 482, 597, 1296, 1734
AlwI GGATC 1 cut(s) 1379
AlwNI CAGNNNCTG 2 cut(s) 413, 863
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 910, 1629
ApeKI GCWGC 4 cut(s) 392, 1202, 1352, 1423
ApoI RAATTY 4 cut(s) 263, 1006, 1063, 1075
ArsI GACNNNNNNTTYG 4 cut(s) 443, 475, 497, 529
AsiGI ACCGGT 1 cut(s) 1544
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 2 cut(s) 68, 1254
AsuHPI GGTGA 6 cut(s) 16, 38, 443, 565, 1439, 1559
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 1365
BanII GRGCYC 1 cut(s) 1592
Bbv12I GWGCWC 1 cut(s) 1592
BbvI GCAGC 4 cut(s) 404, 1214, 1339, 1435
BccI CCATC 5 cut(s) 191, 204, 698, 1087, 1136
BciT130I CCWGG 1 cut(s) 839
BciVI GTATCC 1 cut(s) 351
BclI TGATCA 1 cut(s) 1402
BcnI CCSGG 2 cut(s) 68, 1254
BcoDI GTCTC 5 cut(s) 312, 482, 597, 1296, 1734
BfaI CTAG 1 cut(s) 1725
BfmI CTRYAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 4 cut(s) 393, 1203, 1353, 1424
BlpI GCTNAGC 1 cut(s) 1591
BlsI GCNGC 4 cut(s) 394, 1204, 1354, 1425
Bme1390I CCNGG 3 cut(s) 68, 839, 1254
Bme18I GGWCC 1 cut(s) 459
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 2 cut(s) 777, 845
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 2 cut(s) 58, 705
BmrFI CCNGG 3 cut(s) 68, 839, 1254
BmrI ACTGGG 2 cut(s) 931, 1135
BmsI GCATC 5 cut(s) 490, 564, 643, 856, 1724
BmuI ACTGGG 2 cut(s) 931, 1135
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 1 cut(s) 1194
Bpu1102I GCTNAGC 1 cut(s) 1591
BpuEI CTTGAG 2 cut(s) 452, 1307
BpuMI CCSGG 2 cut(s) 68, 1254
BsaI GGTCTC 2 cut(s) 482, 1734
BsaJI CCNNGG 5 cut(s) 630, 838, 1492, 1642, 1692
BsaWI WCCGGW 1 cut(s) 1544
BsaXI ACNNNNNCTCC 2 cut(s) 1473, 1503
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 700
Bse118I RCCGGY 1 cut(s) 1544
Bse1I ACTGG 2 cut(s) 937, 1130
Bse3DI GCAATG 5 cut(s) 560, 590, 609, 897, 1038
BseBI CCWGG 1 cut(s) 839
BseDI CCNNGG 5 cut(s) 630, 838, 1492, 1642, 1692
BseGI GGATG 8 cut(s) 76, 215, 690, 741, 934, 1054, 1098, 1502
BseLI CCNNNNNNNGG 2 cut(s) 161, 700
BseMI GCAATG 5 cut(s) 560, 590, 609, 897, 1038
BseMII CTCAG 5 cut(s) 132, 870, 1246, 1466, 1605
BseNI ACTGG 2 cut(s) 937, 1130
BseSI GKGCMC 1 cut(s) 1365
BseXI GCAGC 4 cut(s) 404, 1214, 1339, 1435
BshFI GGCC 2 cut(s) 912, 1631
BshTI ACCGGT 1 cut(s) 1544
BsiHKAI GWGCWC 1 cut(s) 1592
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 3 cut(s) 68, 1253, 1545
BslFI GGGAC 2 cut(s) 855, 1500
BslI CCNNNNNNNGG 2 cut(s) 161, 700
BsmAI GTCTC 5 cut(s) 312, 482, 597, 1296, 1734
BsmFI GGGAC 2 cut(s) 855, 1500
BsmI GAATGC 1 cut(s) 1441
BsnI GGCC 2 cut(s) 912, 1631
Bso31I GGTCTC 2 cut(s) 482, 1734
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 1365, 1592
Bsp143I GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
Bsp1720I GCTNAGC 1 cut(s) 1591
Bsp19I CCATGG 1 cut(s) 1642
BspACI CCGC 3 cut(s) 293, 443, 1266
BspANI GGCC 2 cut(s) 912, 1631
BspCNI CTCAG 5 cut(s) 131, 869, 1245, 1465, 1604
BspLI GGNNCC 2 cut(s) 58, 705
BspPI GGATC 1 cut(s) 1379
BspTNI GGTCTC 2 cut(s) 482, 1734
BsrDI GCAATG 5 cut(s) 560, 590, 609, 897, 1038
BsrFI RCCGGY 1 cut(s) 1544
BsrI ACTGG 2 cut(s) 937, 1130
BssAI RCCGGY 1 cut(s) 1544
BssECI CCNNGG 5 cut(s) 630, 838, 1492, 1642, 1692
BssMI GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
BssT1I CCWWGG 4 cut(s) 630, 1492, 1642, 1692
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 2 cut(s) 484, 570
BstAPI GCANNNNNTGC 1 cut(s) 653
BstDEI CTNAG 7 cut(s) 118, 856, 1215, 1232, 1430, 1452, 1591
BstDSI CCRYGG 1 cut(s) 1642
BstF5I GGATG 8 cut(s) 76, 215, 690, 741, 934, 1054, 1098, 1502
BstKTI GATC 5 cut(s) 604, 1374, 1396, 1405, 1665
BstMAI GTCTC 5 cut(s) 312, 482, 597, 1296, 1734
BstMBI GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
BstMWI GCNNNNNNNGC 5 cut(s) 653, 970, 1136, 1145, 1211
BstNI CCWGG 1 cut(s) 839
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 3 cut(s) 66, 837, 1252
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 1365
BstV1I GCAGC 4 cut(s) 404, 1214, 1339, 1435
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 2 cut(s) 912, 1631
BtgI CCRYGG 1 cut(s) 1642
BtgZI GCGATG 1 cut(s) 513
BtrI CACGTC 2 cut(s) 777, 845
BtsCI GGATG 8 cut(s) 76, 215, 690, 741, 934, 1054, 1098, 1502
BtsIMutI CAGTG 2 cut(s) 480, 864
CaiI CAGNNNCTG 2 cut(s) 413, 863
Cfr10I RCCGGY 1 cut(s) 1544
Cfr13I GGNCC 1 cut(s) 459
Csp6I GTAC 2 cut(s) 940, 1219
CspAI ACCGGT 1 cut(s) 1544
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 5 cut(s) 296, 304, 463, 871, 1643
CviQI GTAC 2 cut(s) 940, 1219
DdeI CTNAG 7 cut(s) 118, 856, 1215, 1232, 1430, 1452, 1591
DpnI GATC 5 cut(s) 603, 1373, 1395, 1404, 1664
DpnII GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
EciI GGCGGA 1 cut(s) 1281
Ecl136II GAGCTC 1 cut(s) 1590
Eco130I CCWWGG 4 cut(s) 630, 1492, 1642, 1692
Eco147I AGGCCT 1 cut(s) 1631
Eco24I GRGCYC 1 cut(s) 1592
Eco31I GGTCTC 2 cut(s) 482, 1734
Eco47I GGWCC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 1590
Eco57I CTGAAG 5 cut(s) 477, 860, 1092, 1589, 1659
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 1590
EcoRII CCWGG 1 cut(s) 837
EcoT14I CCWWGG 4 cut(s) 630, 1492, 1642, 1692
EcoT38I GRGCYC 1 cut(s) 1592
ErhI CCWWGG 4 cut(s) 630, 1492, 1642, 1692
FaeI CATG 5 cut(s) 299, 307, 466, 874, 1646
FalI AAGNNNNNCTT 4 cut(s) 305, 337, 700, 732
FaqI GGGAC 2 cut(s) 855, 1500
FatI CATG 5 cut(s) 295, 303, 462, 870, 1642
FbaI TGATCA 1 cut(s) 1402
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 393, 1203, 1353, 1424
FokI GGATG 8 cut(s) 83, 222, 677, 728, 941, 1061, 1105, 1509
FriOI GRGCYC 1 cut(s) 1592
Fsp4HI GCNGC 4 cut(s) 393, 1203, 1353, 1424
FspBI CTAG 1 cut(s) 1725
GluI GCNGC 4 cut(s) 393, 1203, 1353, 1424
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 2 cut(s) 912, 1631
HapII CCGG 3 cut(s) 68, 1253, 1545
Hin1II CATG 5 cut(s) 299, 307, 466, 874, 1646
HincII GTYRAC 3 cut(s) 17, 550, 1057
HindII GTYRAC 3 cut(s) 17, 550, 1057
HindIII AAGCTT 1 cut(s) 1246
HpaII CCGG 3 cut(s) 68, 1253, 1545
HphI GGTGA 6 cut(s) 16, 38, 443, 565, 1439, 1559
Hpy166II GTNNAC 8 cut(s) 17, 319, 550, 573, 774, 1057, 1558, 1699
Hpy188I TCNGA 4 cut(s) 285, 788, 1235, 1455
Hpy188III TCNNGA 7 cut(s) 403, 414, 517, 599, 1162, 1337, 1400
Hpy8I GTNNAC 8 cut(s) 17, 319, 550, 573, 774, 1057, 1558, 1699
HpyAV CCTTC 4 cut(s) 38, 1232, 1564, 1646
HpyCH4III ACNGT 2 cut(s) 484, 570
HpyCH4IV ACGT 5 cut(s) 776, 844, 1386, 1551, 1710
HpyF10VI GCNNNNNNNGC 5 cut(s) 653, 970, 1136, 1145, 1211
HpyF3I CTNAG 7 cut(s) 118, 856, 1215, 1232, 1430, 1452, 1591
HpySE526I ACGT 5 cut(s) 776, 844, 1386, 1551, 1710
Hsp92II CATG 5 cut(s) 299, 307, 466, 874, 1646
Ksp22I TGATCA 1 cut(s) 1402
Kzo9I GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
LmnI GCTCC 4 cut(s) 709, 1145, 1420, 1587
Lsp1109I GCAGC 4 cut(s) 404, 1214, 1339, 1435
LweI GCATC 5 cut(s) 490, 564, 643, 856, 1724
MaeI CTAG 1 cut(s) 1725
MaeII ACGT 5 cut(s) 776, 844, 1386, 1551, 1710
MaeIII GTNAC 6 cut(s) 257, 329, 790, 1499, 1547, 1563
MalI GATC 5 cut(s) 603, 1373, 1395, 1404, 1664
MboI GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
MboII GAAGA 3 cut(s) 47, 1665, 1672
MhlI GDGCHC 2 cut(s) 1365, 1592
MluCI AATT 8 cut(s) 263, 451, 1006, 1063, 1075, 1113, 1379, 1703
MlyI GAGTC 3 cut(s) 1298, 1482, 1604
MmeI TCCRAC 3 cut(s) 31, 263, 718
MseI TTAA 6 cut(s) 191, 203, 1134, 1173, 1530, 1747
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 3 cut(s) 68, 1253, 1545
MspR9I CCNGG 3 cut(s) 68, 839, 1254
Mva1269I GAATGC 1 cut(s) 1441
MvaI CCWGG 1 cut(s) 839
MwoI GCNNNNNNNGC 5 cut(s) 653, 970, 1136, 1145, 1211
NciI CCSGG 2 cut(s) 68, 1254
NcoI CCATGG 1 cut(s) 1642
NdeII GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
NlaIII CATG 5 cut(s) 299, 307, 466, 874, 1646
NlaIV GGNNCC 2 cut(s) 58, 705
NmuCI GTSAC 2 cut(s) 329, 1547
NspI RCATGY 1 cut(s) 307
PceI AGGCCT 1 cut(s) 1631
PctI GAATGC 1 cut(s) 1441
PfeI GAWTC 8 cut(s) 248, 286, 446, 639, 932, 1456, 1464, 1685
PflFI GACNNNGTC 1 cut(s) 12
PinAI ACCGGT 1 cut(s) 1544
PkrI GCNGC 4 cut(s) 394, 1204, 1354, 1425
PleI GAGTC 3 cut(s) 1297, 1482, 1604
PpsI GAGTC 3 cut(s) 1297, 1482, 1604
PsiI TTATAA 3 cut(s) 179, 422, 1122
Psp124BI GAGCTC 1 cut(s) 1592
Psp6I CCWGG 1 cut(s) 837
PspGI CCWGG 1 cut(s) 837
PspN4I GGNNCC 2 cut(s) 58, 705
PspPI GGNCC 1 cut(s) 459
PstNI CAGNNNCTG 2 cut(s) 413, 863
PsyI GACNNNGTC 1 cut(s) 12
RsaI GTAC 2 cut(s) 941, 1220
RsaNI GTAC 2 cut(s) 940, 1219
RseI CAYNNNNRTG 1 cut(s) 69
SacI GAGCTC 1 cut(s) 1592
SalI GTCGAC 1 cut(s) 15
SaqAI TTAA 6 cut(s) 191, 203, 1134, 1173, 1530, 1747
SatI GCNGC 4 cut(s) 393, 1203, 1353, 1424
Sau3AI GATC 5 cut(s) 601, 1371, 1393, 1402, 1662
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 3 cut(s) 1298, 1482, 1604
ScrFI CCNGG 3 cut(s) 68, 839, 1254
SduI GDGCHC 2 cut(s) 1365, 1592
SfaNI GCATC 5 cut(s) 490, 564, 643, 856, 1724
SfcI CTRYAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 467, 1286
SmoI CTYRAG 2 cut(s) 467, 1286
Sse9I AATT 8 cut(s) 263, 451, 1006, 1063, 1075, 1113, 1379, 1703
SseBI AGGCCT 1 cut(s) 1631
SsiI CCGC 3 cut(s) 293, 443, 1266
SspI AATATT 1 cut(s) 1303
SspMI CTAG 1 cut(s) 1725
SstI GAGCTC 1 cut(s) 1592
StuI AGGCCT 1 cut(s) 1631
StyD4I CCNGG 3 cut(s) 66, 837, 1252
StyI CCWWGG 4 cut(s) 630, 1492, 1642, 1692
TaaI ACNGT 2 cut(s) 484, 570
TaiI ACGT 5 cut(s) 779, 847, 1389, 1554, 1713
TaqI TCGA 2 cut(s) 16, 516
TasI AATT 8 cut(s) 263, 451, 1006, 1063, 1075, 1113, 1379, 1703
TfiI GAWTC 8 cut(s) 248, 286, 446, 639, 932, 1456, 1464, 1685
Tru1I TTAA 6 cut(s) 191, 203, 1134, 1173, 1530, 1747
Tru9I TTAA 6 cut(s) 191, 203, 1134, 1173, 1530, 1747
TscAI CASTG 2 cut(s) 487, 864
TseFI GTSAC 2 cut(s) 329, 1547
TseI GCWGC 4 cut(s) 392, 1202, 1352, 1423
Tsp45I GTSAC 2 cut(s) 329, 1547
TspDTI ATGAA 4 cut(s) 57, 827, 1212, 1536
TspRI CASTG 2 cut(s) 487, 864
Tth111I GACNNNGTC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 4 cut(s) 263, 1006, 1063, 1075
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 16
XspI CTAG 1 cut(s) 1725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.