Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

16498391 .. 16502174

Gene Structure 3784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGGAGCAACAGGAAGATTAGGGAACTATTTGACCCGTTTCAGCATCGAATCGGGTCACCCGACTTTCGCTCTCATCAGAAACACCACTCTCTCCGATAAGCTGAAATCTCTCTCCGACGCCGGCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGCAGAAGCAGTGAGTAAAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCGTCAGAGTTATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAAATCCTGATAAAACTCAAGTCTCGGATCTTGATCATGACTTCTATTCGAAGAAATCAGAGATTAGGCATATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGACTGTTCATGAGAGTTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCTCCTCCAACAGATAAAGTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTTTTCGTGAATGATGTCGATGTTGCAGCATTTACTATCAAGACGATAGATGATCCTCGAACACTGAATAAGACCTTGTACCTTAGCCCGCCCGGAAACATATGTTCCATGAATGATCTTGTCGAGCTCTGGGAGGGCAAGATTGAGAAGAAGCTTGAGAAAACGTTTGCTACAGAGAATCAACTTCTCAAGAAGATCAAAGAAACTCCATATCCGGATAACATGGAGATGGTATTCATATACTCTGTCTTTATCAAAGGAGATCACACATACTTCGACATCGAGTCTTGTGGTGGAGTGAATGGTACTGAGCTTTACCCTGATGTCAAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

306

Amino Acids

34.07

Weight (kDa)

5.52

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 302	4.7e-91	NmrA-like family
NAD_binding_10	PF13460	14 - 203	1.1e-16	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	2 cut(s)	450, 641
AclI	AACGTT	2 cut(s)	543, 716
AclWI	GGATC	2 cut(s)	372, 599
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	632, 859
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	500
AhdI	GACNNNNNGTC	1 cut(s)	835
AluBI	AGCT	7 cut(s)	139, 201, 299, 551, 679, 706, 865
AluI	AGCT	7 cut(s)	139, 201, 299, 551, 679, 706, 865
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	372, 599
Aor13HI	TCCGGA	1 cut(s)	766
ApeKI	GCWGC	2 cut(s)	447, 578
AsuC2I	CCSGG	2 cut(s)	492, 645
AsuHPI	GGTGA	2 cut(s)	86, 244
AsuII	TTCGAA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	2 cut(s)	434, 590
BccI	CCATC	5 cut(s)	256, 314, 484, 530, 775
BclI	TGATCA	3 cut(s)	33, 265, 370
BcnI	CCSGG	2 cut(s)	492, 645
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	919
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	2 cut(s)	448, 579
BlpI	GCTNAGC	1 cut(s)	202
BlsI	GCNGC	2 cut(s)	449, 580
Bme1390I	CCNGG	2 cut(s)	492, 645
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	492, 645
BmsI	GCATC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	635
Bpu1102I	GCTNAGC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	3 cut(s)	339, 725, 728
BpuMI	CCSGG	2 cut(s)	492, 645
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	852
BseRI	GAGGAG	5 cut(s)	20, 23, 161, 266, 495
BseXI	GCAGC	2 cut(s)	434, 590
BsiHKAI	GWGCWC	1 cut(s)	681
BsiSI	CCGG	4 cut(s)	159, 491, 645, 767
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp13I	TCCGGA	1 cut(s)	766
Bsp143I	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	450, 641
BspCNI	CTCAG	1 cut(s)	853
BspEI	TCCGGA	1 cut(s)	766
BspHI	TCATGA	2 cut(s)	373, 459
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	372, 599
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
BssNI	GRCGYC	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	456, 526, 892
Bst6I	CTCTTC	2 cut(s)	14, 918
BstACI	GRCGYC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	160, 641
BstDEI	CTNAG	3 cut(s)	202, 635, 861
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	9 cut(s)	36, 237, 268, 367, 373, 607, 670, 750, 817
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	490, 643
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	434, 590
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 614
Cac8I	GCNNGC	2 cut(s)	160, 641
CciI	TCATGA	2 cut(s)	373, 459
Cfr10I	RCCGGY	1 cut(s)	158
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	631, 858
CviAII	CATG	6 cut(s)	257, 374, 460, 661, 775, 886
CviJI	RGCY	9 cut(s)	139, 201, 299, 496, 551, 639, 679, 706, 865
CviKI_1	RGCY	9 cut(s)	139, 201, 299, 496, 551, 639, 679, 706, 865
CviQI	GTAC	2 cut(s)	631, 858
DdeI	CTNAG	3 cut(s)	202, 635, 861
DpnI	GATC	9 cut(s)	35, 236, 267, 366, 372, 606, 669, 749, 816
DpnII	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
DriI	GACNNNNNGTC	1 cut(s)	835
Eam1104I	CTCTTC	2 cut(s)	14, 918
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	2 cut(s)	14, 918
Ecl136II	GAGCTC	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	679
Eco91I	GGTNACC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	679
EcoO65I	GGTNACC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	681
FaeI	CATG	6 cut(s)	260, 377, 463, 664, 778, 889
FatI	CATG	6 cut(s)	256, 373, 459, 660, 774, 885
FauI	CCCGC	1 cut(s)	648
FauNDI	CATATG	2 cut(s)	408, 653
FbaI	TGATCA	3 cut(s)	33, 265, 370
Fnu4HI	GCNGC	2 cut(s)	448, 579
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	2 cut(s)	448, 579
FspBI	CTAG	1 cut(s)	919
GluI	GCNGC	2 cut(s)	448, 579
HapII	CCGG	4 cut(s)	159, 491, 645, 767
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	6 cut(s)	260, 377, 463, 664, 778, 889
HindIII	AAGCTT	2 cut(s)	199, 704
HinfI	GANTC	5 cut(s)	86, 416, 427, 730, 836
HpaII	CCGG	4 cut(s)	159, 491, 645, 767
HphI	GGTGA	2 cut(s)	86, 244
Hpy188I	TCNGA	9 cut(s)	41, 116, 133, 154, 270, 284, 364, 397, 421
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	456, 526, 892
HpyCH4IV	ACGT	2 cut(s)	543, 716
HpyCH4V	TGCA	3 cut(s)	242, 487, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	3 cut(s)	202, 635, 861
HpySE526I	ACGT	2 cut(s)	543, 716
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	260, 377, 463, 664, 778, 889
Kpn2I	TCCGGA	1 cut(s)	766
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	3 cut(s)	33, 265, 370
Kzo9I	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	41, 335
Lsp1109I	GCAGC	2 cut(s)	434, 590
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	919
MaeII	ACGT	2 cut(s)	543, 716
MaeIII	GTNAC	3 cut(s)	92, 163, 520
MalI	GATC	9 cut(s)	35, 236, 267, 366, 372, 606, 669, 749, 816
MboI	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
MboII	GAAGA	8 cut(s)	25, 28, 31, 63, 400, 712, 757, 905
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	2 cut(s)	177, 533
MnlI	CCTC	9 cut(s)	179, 181, 182, 287, 306, 415, 516, 618, 679
MreI	CGCCGGCG	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	766
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	2 cut(s)	779, 890
MspI	CCGG	4 cut(s)	159, 491, 645, 767
MspR9I	CCNGG	2 cut(s)	492, 645
MwoI	GCNNNNNNNGC	1 cut(s)	493
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	2 cut(s)	492, 645
NdeI	CATATG	2 cut(s)	408, 653
NdeII	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	6 cut(s)	260, 377, 463, 664, 778, 889
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	92, 520
NspI	RCATGY	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	386
PagI	TCATGA	2 cut(s)	373, 459
PciI	ACATGT	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	4 cut(s)	86, 416, 427, 730
PkrI	GCNGC	2 cut(s)	449, 580
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PscI	ACATGT	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	681
Psp1406I	AACGTT	2 cut(s)	543, 716
PspEI	GGTNACC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	632, 859
RsaNI	GTAC	2 cut(s)	631, 858
RseI	CAYNNNNRTG	2 cut(s)	779, 890
SacI	GAGCTC	1 cut(s)	681
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	448, 579
Sau3AI	GATC	9 cut(s)	33, 234, 265, 364, 370, 604, 667, 747, 814
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	492, 645
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	723
SfuI	TTCGAA	1 cut(s)	386
SgrAI	CRCCGGYG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	779, 890
SmlI	CTYRAG	3 cut(s)	354, 707, 740
SmoI	CTYRAG	3 cut(s)	354, 707, 740
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	450, 641
SspMI	CTAG	1 cut(s)	919
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	490, 643
TaaI	ACNGT	3 cut(s)	456, 526, 892
TaiI	ACGT	2 cut(s)	546, 719
TaqI	TCGA	7 cut(s)	84, 386, 570, 610, 675, 828, 834
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	4 cut(s)	86, 416, 427, 730
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	219, 621
TseFI	GTSAC	2 cut(s)	92, 520
TseI	GCWGC	2 cut(s)	447, 578
Tsp45I	GTSAC	2 cut(s)	92, 520
TspDTI	ATGAA	5 cut(s)	171, 207, 448, 677, 778
TspRI	CASTG	2 cut(s)	219, 621
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.