Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

10363686 .. 10367028

Gene Structure 3343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1073600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGGGGAAGAGCCGGGTACTGATAATCGGAGTAACAGGAAATCTGGGTCACCATTTGGCCCAAGCCGCCCTCCAATTCTCTCACCCAACATTCGCTCTCGTCAGACCCTCCACCTTCTCCGACCCCCACAAGTCTCATAAGCTTCACTCTCTCTCCAGTGCCGGCGTCACCCTCCTCCAAGGTTCGCTGGAAGACGAAGAGAGCCTAATGACAGCGGTGAAGCAAGTGGATGTGGTAATATGTGCTGTTTCGGCCAAACAGGTCCTCCGTCAGAAGTTCCTTATCCAAGTTATCAAACAAGCTGGCTGCATCAAGAGGTTTATTCCCTCAGAATTTGGATTGGACCCAGATAAAACTAGAATATCAGGCATGGACCACAACTTCTATGAGCAGAAAGCTGAGATTAGGCGTTTTGTGGAAACCAATGGCATTCCATATACTTACATTTCCTGCAATTTCTACATGAGCTATTTGCTTCCTCAGCTTGTTCAGCCAGGCCTCAAGGTCCCTCCAAGGGACAAAGTCACAATTTTCGGAGACGGGAATACTAAAGGTGTTTTTGTGAAGGAAAGTGATGTTGCTGCATTCACTATCAGAGCATTGGATGATCCACGAACCTTGAATAAGGTGGTGTACTTAAGGCCGCCAGGGAATGTTTACTCGATGAATGAACTTGTTGAGATTTGGGAGAGTAAGATTGGGAAGAAGCTTGACAAGGTATTTGTATCAGAAGAAGAGCTTCTTGAGAGAGTTAAAGATACACCATATCCTGACAACATGGAGATGGTGTTCATATATTCTGCTTTCATAAAGGGAGATCAAACTTACTTTGATATTGAGTCATCTGGTGGTGTAGATGGGACAAAACTGTATCCGCAGCAGAATTTCACTACAATCAGTCAATATTTAGACACCCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

34.63

Weight (kDa)

6.4

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 304	9.2e-82	NmrA-like family
NAD_binding_10	PF13460	11 - 205	1.6e-15	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	69, 218, 647, 878
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	335, 886
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	21, 638
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflII	CTTAAG	1 cut(s)	640
AgsI	TTSAA	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	496, 649
AloI	GAACNNNNNNTCC	2 cut(s)	776, 808
AluBI	AGCT	7 cut(s)	145, 305, 401, 471, 487, 712, 742
AluI	AGCT	7 cut(s)	145, 305, 401, 471, 487, 712, 742
Alw26I	GTCTC	2 cut(s)	141, 534
AlwI	GGATC	1 cut(s)	605
AoxI	GGCC	4 cut(s)	60, 255, 499, 644
ApeKI	GCWGC	3 cut(s)	309, 584, 880
ApoI	RAATTY	2 cut(s)	335, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
Asp700I	GAANNNNTTC	1 cut(s)	741
AspS9I	GGNCC	5 cut(s)	61, 265, 346, 376, 508
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	4 cut(s)	44, 77, 163, 232
AvaII	GGWCC	4 cut(s)	265, 346, 376, 508
BbsI	GAAGAC	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	3 cut(s)	296, 571, 892
BccI	CCATC	2 cut(s)	781, 854
BciT130I	CCWGG	2 cut(s)	498, 651
BciVI	GTATCC	1 cut(s)	885
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	141, 534
BfaI	CTAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	885
BisI	GCNGC	5 cut(s)	69, 310, 585, 647, 881
BlsI	GCNGC	5 cut(s)	70, 311, 586, 648, 882
Bme1390I	CCNGG	3 cut(s)	17, 498, 651
Bme18I	GGWCC	4 cut(s)	265, 346, 376, 508
BmgT120I	GGNCC	5 cut(s)	61, 265, 346, 376, 508
BmiI	GGNNCC	2 cut(s)	348, 510
BmrFI	CCNGG	3 cut(s)	17, 498, 651
BmsI	GCATC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	488, 767
BpuMI	CCSGG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	181, 515, 650
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 252, 282, 776, 806
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	498, 651
BseDI	CCNNGG	3 cut(s)	181, 515, 650
BseGI	GGATG	2 cut(s)	238, 613
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	3 cut(s)	345, 393, 497
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	3 cut(s)	296, 571, 892
BshFI	GGCC	4 cut(s)	62, 257, 501, 646
BsiSI	CCGG	2 cut(s)	16, 165
BslFI	GGGAC	3 cut(s)	494, 533, 877
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	141, 534
BsmBI	CGTCTC	1 cut(s)	534
BsmFI	GGGAC	3 cut(s)	494, 533, 877
BsmI	GAATGC	2 cut(s)	432, 587
BsnI	GGCC	4 cut(s)	62, 257, 501, 646
Bsp143I	GATC	2 cut(s)	610, 820
BspACI	CCGC	4 cut(s)	69, 218, 647, 878
BspANI	GGCC	4 cut(s)	62, 257, 501, 646
BspCNI	CTCAG	3 cut(s)	344, 394, 496
BspLI	GGNNCC	2 cut(s)	348, 510
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	2 cut(s)	5, 732
BspTI	CTTAAG	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	181, 515, 650
BssMI	GATC	2 cut(s)	610, 820
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	181, 515
Bst2UI	CCWGG	2 cut(s)	498, 651
Bst4CI	ACNGT	1 cut(s)	873
Bst6I	CTCTTC	3 cut(s)	5, 195, 732
BstACI	GRCGYC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	166, 307
BstDEI	CTNAG	3 cut(s)	331, 402, 483
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	238, 613
BstKTI	GATC	2 cut(s)	613, 823
BstMAI	GTCTC	2 cut(s)	141, 534
BstMBI	GATC	2 cut(s)	610, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 254, 484, 493
BstNI	CCWGG	2 cut(s)	498, 651
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	15, 496, 649
BstV1I	GCAGC	3 cut(s)	296, 571, 892
BstV2I	GAAGAC	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	885
BsuRI	GGCC	4 cut(s)	62, 257, 501, 646
BtsCI	GGATG	2 cut(s)	238, 613
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	166, 307
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	61, 265, 346, 376, 508
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	20, 637
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviAII	CATG	3 cut(s)	373, 466, 781
CviQI	GTAC	2 cut(s)	20, 637
DdeI	CTNAG	3 cut(s)	331, 402, 483
DpnI	GATC	2 cut(s)	612, 822
DpnII	GATC	2 cut(s)	610, 820
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	5, 195, 732
EarI	CTCTTC	3 cut(s)	5, 195, 732
Eco130I	CCWWGG	2 cut(s)	181, 515
Eco147I	AGGCCT	1 cut(s)	501
Eco47I	GGWCC	4 cut(s)	265, 346, 376, 508
Eco91I	GGTNACC	1 cut(s)	50
EcoO109I	RGGNCCY	2 cut(s)	265, 508
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	496, 649
EcoT14I	CCWWGG	2 cut(s)	181, 515
ErhI	CCWWGG	2 cut(s)	181, 515
Esp3I	CGTCTC	1 cut(s)	534
FaeI	CATG	3 cut(s)	376, 469, 784
FalI	AAGNNNNNCTT	4 cut(s)	726, 758, 729, 761
FaqI	GGGAC	3 cut(s)	494, 533, 877
FatI	CATG	3 cut(s)	372, 465, 780
Fnu4HI	GCNGC	5 cut(s)	69, 310, 585, 647, 881
FokI	GGATG	2 cut(s)	245, 620
Fsp4HI	GCNGC	5 cut(s)	69, 310, 585, 647, 881
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	5 cut(s)	69, 310, 585, 647, 881
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	62, 257, 501, 646
HapII	CCGG	2 cut(s)	16, 165
HgaI	GACGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	376, 469, 784
HindIII	AAGCTT	2 cut(s)	143, 710
HinfI	GANTC	1 cut(s)	842
HpaII	CCGG	2 cut(s)	16, 165
HphI	GGTGA	4 cut(s)	44, 77, 163, 232
Hpy166II	GTNNAC	2 cut(s)	637, 661
Hpy188I	TCNGA	8 cut(s)	32, 107, 124, 276, 334, 539, 599, 733
Hpy188III	TCNNGA	3 cut(s)	316, 746, 773
Hpy8I	GTNNAC	2 cut(s)	637, 661
HpyAV	CCTTC	2 cut(s)	127, 562
HpyCH4III	ACNGT	1 cut(s)	873
HpyCH4V	TGCA	3 cut(s)	312, 456, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 254, 484, 493
HpyF3I	CTNAG	3 cut(s)	331, 402, 483
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	376, 469, 784
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	610, 820
LguI	GCTCTTC	2 cut(s)	5, 732
Lsp1109I	GCAGC	3 cut(s)	296, 571, 892
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	4 cut(s)	34, 50, 169, 526
MalI	GATC	2 cut(s)	612, 822
MboI	GATC	2 cut(s)	610, 820
MboII	GAAGA	6 cut(s)	22, 206, 212, 718, 746, 749
MluCI	AATT	5 cut(s)	77, 335, 457, 531, 886
MlyI	GAGTC	1 cut(s)	851
MmeI	TCCRAC	1 cut(s)	147
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	2 cut(s)	641, 756
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	640
MspI	CCGG	2 cut(s)	16, 165
MspR9I	CCNGG	3 cut(s)	17, 498, 651
Mva1269I	GAATGC	2 cut(s)	432, 587
MvaI	CCWGG	2 cut(s)	498, 651
MwoI	GCNNNNNNNGC	4 cut(s)	68, 254, 484, 493
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	610, 820
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	376, 469, 784
NlaIV	GGNNCC	2 cut(s)	348, 510
NmuCI	GTSAC	3 cut(s)	50, 169, 526
PceI	AGGCCT	1 cut(s)	501
PciSI	GCTCTTC	2 cut(s)	5, 732
PctI	GAATGC	2 cut(s)	432, 587
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	741
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	5 cut(s)	70, 311, 586, 648, 882
PleI	GAGTC	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	850
PpuMI	RGGWCCY	2 cut(s)	265, 508
Psp5II	RGGWCCY	2 cut(s)	265, 508
Psp6I	CCWGG	2 cut(s)	496, 649
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	496, 649
PspN4I	GGNNCC	2 cut(s)	348, 510
PspPI	GGNCC	5 cut(s)	61, 265, 346, 376, 508
PspPPI	RGGWCCY	2 cut(s)	265, 508
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	2 cut(s)	21, 638
RsaNI	GTAC	2 cut(s)	20, 637
RseI	CAYNNNNRTG	1 cut(s)	785
SapI	GCTCTTC	2 cut(s)	5, 732
SaqAI	TTAA	2 cut(s)	641, 756
SatI	GCNGC	5 cut(s)	69, 310, 585, 647, 881
Sau3AI	GATC	2 cut(s)	610, 820
Sau96I	GGNCC	5 cut(s)	61, 265, 346, 376, 508
SchI	GAGTC	1 cut(s)	851
ScrFI	CCNGG	3 cut(s)	17, 498, 651
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	4 cut(s)	265, 346, 376, 508
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	3 cut(s)	503, 640, 746
SmoI	CTYRAG	3 cut(s)	503, 640, 746
Sse9I	AATT	5 cut(s)	77, 335, 457, 531, 886
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	4 cut(s)	69, 218, 647, 878
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	15, 496, 649
StyI	CCWWGG	2 cut(s)	181, 515
TaaI	ACNGT	1 cut(s)	873
TaqI	TCGA	1 cut(s)	665
TasI	AATT	5 cut(s)	77, 335, 457, 531, 886
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	71, 649
Tru1I	TTAA	2 cut(s)	641, 756
Tru9I	TTAA	2 cut(s)	641, 756
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	3 cut(s)	50, 169, 526
TseI	GCWGC	3 cut(s)	309, 584, 880
Tsp45I	GTSAC	3 cut(s)	50, 169, 526
TspDTI	ATGAA	4 cut(s)	683, 687, 784, 799
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	4 cut(s)	265, 346, 376, 508
XapI	RAATTY	2 cut(s)	335, 886
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.