Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

51634520 .. 51637215

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGAAGAACAAGAGCAGAGTACTGATAATCGGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCGCAAGTCCCAAAACCTTCAAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGTCGGTTCGCTGGAAGATGAAGATAGCCTTGTTGAAGCAGTGAAGCAAGTTGATGTTGTTGTTTGTGCTGTTCAAGCCAAACAGGTGCTCCATCAGAAGCTTCTTATCCAAGTTATCAAAAATGCTGGCTCCATCAAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCAAGTTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCTGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTGTTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCGAGGGACAAAGTCACGATTTTCGGGGATGGAAATACTAAAGGCGTTTTTGTCAATGAAATTGATGTAGCTGCCTTCACTATTAGGACATTGGACGATCCACAAACCTTGAACAAAGTGTTGTATTTTAGGCCACCTGGAAATGTGTACTCGCTGAATGAACTTGTTGAGCTTTGGGAGAAGACTTCATATCCTGACAACATGGCCCTGATTTTCATATATTCTGCTTTCATAAAGGGCGATCAAACTTACTTTGATATCGAGTCAGCTGATAGTGCCGATGCGACAAAACTGTATCCAGAGCTGAATTATACTACAATCAGTCAATATTTAGACACTCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

288

Amino Acids

32.11

Weight (kDa)

5.27

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 284	1.5e-66	NmrA-like family
NAD_binding_10	PF13460	12 - 207	1.2e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	2 cut(s)	171, 418
AfaI	GTAC	2 cut(s)	24, 668
AgsI	TTSAA	5 cut(s)	152, 221, 260, 399, 631
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	8 cut(s)	286, 407, 431, 477, 590, 691, 788, 823
AluI	AGCT	8 cut(s)	286, 407, 431, 477, 590, 691, 788, 823
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	3 cut(s)	505, 650, 723
ApeKI	GCWGC	2 cut(s)	499, 590
ApoI	RAATTY	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	352, 505, 724
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	47, 80
AvaII	GGWCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	511, 577
BccI	CCATC	5 cut(s)	285, 326, 343, 373, 542
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	1 cut(s)	657
BciVI	GTATCC	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	825
BisI	GCNGC	2 cut(s)	500, 591
BlsI	GCNGC	2 cut(s)	501, 592
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	504, 657
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	3 cut(s)	352, 505, 724
BmiI	GGNNCC	2 cut(s)	316, 354
BmrFI	CCNGG	2 cut(s)	504, 657
BmsI	GCATC	2 cut(s)	154, 790
BpiI	GAAGAC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	504
BsaHI	GRCGYC	2 cut(s)	171, 418
BsaJI	CCNNGG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 258, 288
Bse118I	RCCGGY	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	384, 553
BseMII	CTCAG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	511, 577
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	3 cut(s)	507, 652, 725
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	168, 503
BslFI	GGGAC	2 cut(s)	124, 539
BsmFI	GGGAC	2 cut(s)	124, 539
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	3 cut(s)	507, 652, 725
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	616, 760
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	3 cut(s)	507, 652, 725
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	316, 354
BspPI	GGATC	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	2 cut(s)	616, 760
BssNI	GRCGYC	2 cut(s)	171, 418
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	1 cut(s)	813
BstACI	GRCGYC	2 cut(s)	171, 418
BstC8I	GCNNGC	3 cut(s)	73, 169, 313
BstDEI	CTNAG	1 cut(s)	408
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	384, 553
BstKTI	GATC	2 cut(s)	619, 763
BstMBI	GATC	2 cut(s)	616, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 794
BstNI	CCWGG	1 cut(s)	657
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	502, 655
BstV1I	GCAGC	2 cut(s)	511, 577
BstV2I	GAAGAC	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	507, 652, 725
BtsCI	GGATG	2 cut(s)	384, 553
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	73, 169, 313
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	352, 505, 724
CseI	GACGC	3 cut(s)	160, 373, 407
Csp6I	GTAC	2 cut(s)	23, 667
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	1 cut(s)	721
CviQI	GTAC	2 cut(s)	23, 667
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	2 cut(s)	618, 762
DpnII	GATC	2 cut(s)	616, 760
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	655
EcoRV	GATATC	1 cut(s)	778
FaeI	CATG	1 cut(s)	724
FaiI	YATR	7 cut(s)	471, 709, 722, 737, 739, 752, 831
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	2 cut(s)	124, 539
FatI	CATG	1 cut(s)	720
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	500, 591
FokI	GGATG	2 cut(s)	391, 560
Fsp4HI	GCNGC	2 cut(s)	500, 591
GluI	GCNGC	2 cut(s)	500, 591
HaeIII	GGCC	3 cut(s)	507, 652, 725
HapII	CCGG	2 cut(s)	168, 503
HgaI	GACGC	3 cut(s)	160, 373, 407
Hin1I	GRCGYC	2 cut(s)	171, 418
Hin1II	CATG	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	2 cut(s)	327, 782
HpaII	CCGG	2 cut(s)	168, 503
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	7 cut(s)	35, 110, 127, 163, 282, 340, 522
Hpy188III	TCNNGA	4 cut(s)	322, 535, 713, 818
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	4 cut(s)	130, 158, 498, 604
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4V	TGCA	2 cut(s)	462, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 794
HpyF3I	CTNAG	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	171, 418
Hsp92II	CATG	1 cut(s)	724
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	616, 760
LmnI	GCTCC	3 cut(s)	35, 279, 320
Lsp1109I	GCAGC	2 cut(s)	511, 577
LweI	GCATC	2 cut(s)	154, 790
MaeIII	GTNAC	3 cut(s)	53, 172, 532
MalI	GATC	2 cut(s)	618, 762
MboI	GATC	2 cut(s)	616, 760
MboII	GAAGA	4 cut(s)	19, 212, 218, 712
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	341, 463, 579, 826
MlyI	GAGTC	1 cut(s)	791
MmeI	TCCRAC	3 cut(s)	133, 150, 330
MnlI	CCTC	6 cut(s)	86, 167, 191, 516, 518, 528
MroNI	GCCGGC	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	2 cut(s)	168, 503
MspR9I	CCNGG	2 cut(s)	504, 657
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	2 cut(s)	260, 794
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	616, 760
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	724
NlaIV	GGNNCC	2 cut(s)	316, 354
NmuCI	GTSAC	3 cut(s)	53, 172, 532
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	438
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	501, 592
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	655
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	316, 354
PspPI	GGNCC	3 cut(s)	352, 505, 724
PsyI	GACNNNGTC	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	2 cut(s)	24, 668
RsaNI	GTAC	2 cut(s)	23, 667
SatI	GCNGC	2 cut(s)	500, 591
Sau3AI	GATC	2 cut(s)	616, 760
Sau96I	GGNCC	3 cut(s)	352, 505, 724
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	2 cut(s)	504, 657
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	2 cut(s)	154, 790
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	4 cut(s)	341, 463, 579, 826
SsiI	CCGC	1 cut(s)	133
SspI	AATATT	1 cut(s)	848
StyD4I	CCNGG	2 cut(s)	502, 655
TaaI	ACNGT	1 cut(s)	813
TaqI	TCGA	1 cut(s)	780
TasI	AATT	4 cut(s)	341, 463, 579, 826
TatI	WGTACW	2 cut(s)	22, 666
TfiI	GAWTC	1 cut(s)	327
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	3 cut(s)	53, 172, 532
TseI	GCWGC	2 cut(s)	499, 590
Tsp45I	GTSAC	3 cut(s)	53, 172, 532
TspDTI	ATGAA	7 cut(s)	219, 319, 591, 693, 696, 724, 739
TspRI	CASTG	1 cut(s)	231
Tth111I	GACNNNGTC	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.