Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000546.1

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

329358 .. 331547

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000546.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgaaggcatttaggcttggtgttgattgcaatgggattggtggttgggtatggagagagagctcagtggtggttatggtgattaatttgggtgtgaagaagaaggtagagagcaaaggggcatcttcgtcgttttggggctcttcttcttcttcttgtagttgttcacggttggagtttggggtttttcttcaatttcaattgttcagcgtcgtcgaaggtctagagatgagaaagagctgggtttattttgggtttgtttttggaagaggaagaagacactctgtgtggatgaagaagacgctctgtgtggatgaagaagagccgcgtactagattttgtttcggatctggttctaatccgtaccgtctgatcaaaagcagagtgggagattttgggttcaaaggtcgggtgaaaccagaaatggagaagaagaagagcagagtactgataatcggagcaacaggaaacctgggtcatcatttagccaatgccagcctccatttctctcaccccactttcgctctcgtccgacccgacaccttctccgacccccgcaagtcccaaaaccttcgagccctctccgatgccggcgtcacactcctccaaggttcgctggaagatgaagagagccttgttgaagcagtgaagcaagttgatgttgttgtttgtgctgttcaagccaaacaggtgctccatcagaagcttcttatccaagttatcaaaaatgctggctccatcaagagattcgttccatcagaatttgggttggacccagataagacgcagatttcagggatggactacaacttctattcaaacaaagccgagattaggcgtcttgtggaagctcaaggcattccctacacttttgtttcctgcaatttctatacgagctatttgcttccttcacttgtgcagccgggcctcaaagtgcctcccagggacaaagtcatgattttcggggatggaaatactaaaggcgtttttgtcaaggaaattgatgtagctgccttcactatcaggacattggacgatccacgaaccttgaacaaagtgttgtattttaggccacccggaaatgtgtactcgctgaatgaacttgttgagctttgggagagtaagattgggaagaagcttgagaaggtgtttgtatcagtatttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

389

Amino Acids

43.6

Weight (kDa)

9.5

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	328
AciI	CCGC	2 cut(s)	326, 556
AclWI	GGATC	2 cut(s)	355, 1031
AcsI	RAATTY	1 cut(s)	761
AcyI	GRCGYC	2 cut(s)	594, 838
AdeI	CACNNNGTG	1 cut(s)	286
AfaI	GTAC	4 cut(s)	331, 365, 447, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	834
AgsI	TTSAA	7 cut(s)	194, 200, 403, 641, 680, 819, 1051
AjnI	CCWGG	2 cut(s)	471, 941
AluBI	AGCT	8 cut(s)	63, 240, 706, 851, 897, 1010, 1111, 1138
AluI	AGCT	8 cut(s)	63, 240, 706, 851, 897, 1010, 1111, 1138
Alw21I	GWGCWC	2 cut(s)	65, 696
AlwI	GGATC	2 cut(s)	355, 1031
AoxI	GGCC	2 cut(s)	925, 1070
ApeKI	GCWGC	2 cut(s)	919, 1010
ApoI	RAATTY	1 cut(s)	761
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	772, 925
AsuC2I	CCSGG	2 cut(s)	924, 1077
AsuHPI	GGTGA	3 cut(s)	91, 424, 503
AvaII	GGWCC	1 cut(s)	772
BanII	GRGCYC	3 cut(s)	65, 143, 580
BbsI	GAAGAC	2 cut(s)	283, 305
Bbv12I	GWGCWC	2 cut(s)	65, 696
BbvI	GCAGC	2 cut(s)	931, 997
BccI	CCATC	5 cut(s)	705, 746, 763, 793, 962
BcgI	CGANNNNNNTGC	4 cut(s)	111, 145, 883, 917
BciT130I	CCWGG	2 cut(s)	473, 943
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	924, 1077
BfaI	CTAG	2 cut(s)	224, 333
BisI	GCNGC	3 cut(s)	326, 920, 1011
BlsI	GCNGC	3 cut(s)	327, 921, 1012
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	4 cut(s)	473, 924, 943, 1077
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	772, 925
BmiI	GGNNCC	2 cut(s)	736, 774
BmrFI	CCNGG	4 cut(s)	473, 924, 943, 1077
BmsI	GCATC	2 cut(s)	131, 577
BpiI	GAAGAC	2 cut(s)	283, 305
BpuEI	CTTGAG	2 cut(s)	837, 1160
BpuMI	CCSGG	2 cut(s)	924, 1077
BsaHI	GRCGYC	2 cut(s)	594, 838
BsaJI	CCNNGG	4 cut(s)	472, 607, 941, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	530, 560, 678, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	834
Bse118I	RCCGGY	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	473, 943
BseDI	CCNNGG	4 cut(s)	472, 607, 941, 942
BseGI	GGATG	4 cut(s)	297, 319, 804, 973
BseLI	CCNNNNNNNGG	1 cut(s)	834
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	931, 997
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	927, 1072
BsiHKAI	GWGCWC	2 cut(s)	65, 696
BsiSI	CCGG	3 cut(s)	591, 923, 1077
BslFI	GGGAC	2 cut(s)	547, 959
BslI	CCNNNNNNNGG	1 cut(s)	834
BsmFI	GGGAC	2 cut(s)	547, 959
BsmI	GAATGC	1 cut(s)	858
BsnI	GGCC	2 cut(s)	927, 1072
Bsp1286I	GDGCHC	4 cut(s)	65, 143, 580, 696
Bsp143I	GATC	3 cut(s)	347, 372, 1036
BspACI	CCGC	2 cut(s)	326, 556
BspANI	GGCC	2 cut(s)	927, 1072
BspCNI	CTCAG	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	2 cut(s)	736, 774
BspPI	GGATC	2 cut(s)	355, 1031
BspQI	GCTCTTC	3 cut(s)	148, 315, 431
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	4 cut(s)	472, 607, 941, 942
BssMI	GATC	3 cut(s)	347, 372, 1036
BssNI	GRCGYC	2 cut(s)	594, 838
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	473, 943
Bst4CI	ACNGT	2 cut(s)	171, 368
Bst6I	CTCTTC	5 cut(s)	148, 262, 315, 431, 621
BstACI	GRCGYC	2 cut(s)	594, 838
BstC8I	GCNNGC	3 cut(s)	496, 592, 733
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	297, 319, 804, 973
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	350, 375, 1039
BstMBI	GATC	3 cut(s)	347, 372, 1036
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	2 cut(s)	473, 943
BstSCI	CCNGG	4 cut(s)	471, 922, 941, 1075
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	931, 997
BstV2I	GAAGAC	2 cut(s)	283, 305
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	927, 1072
BtsCI	GGATG	4 cut(s)	297, 319, 804, 973
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	72, 651
Cac8I	GCNNGC	3 cut(s)	496, 592, 733
CciI	TCATGA	1 cut(s)	954
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	772, 925
CseI	GACGC	5 cut(s)	199, 310, 583, 793, 827
Csp6I	GTAC	4 cut(s)	330, 364, 446, 1087
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	1 cut(s)	955
CviQI	GTAC	4 cut(s)	330, 364, 446, 1087
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	349, 374, 1038
DpnII	GATC	3 cut(s)	347, 372, 1036
DraIII	CACNNNGTG	1 cut(s)	286
Eam1104I	CTCTTC	5 cut(s)	148, 262, 315, 431, 621
EarI	CTCTTC	5 cut(s)	148, 262, 315, 431, 621
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	607
Eco24I	GRGCYC	3 cut(s)	65, 143, 580
Eco47I	GGWCC	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	471, 941
EcoT14I	CCWWGG	1 cut(s)	607
EcoT38I	GRGCYC	3 cut(s)	65, 143, 580
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	1 cut(s)	958
FaiI	YATR	4 cut(s)	52, 77, 891, 956
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	2 cut(s)	547, 959
FatI	CATG	1 cut(s)	954
FauI	CCCGC	1 cut(s)	563
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	326, 920, 1011
FokI	GGATG	4 cut(s)	304, 326, 811, 980
FriOI	GRGCYC	3 cut(s)	65, 143, 580
Fsp4HI	GCNGC	3 cut(s)	326, 920, 1011
FspBI	CTAG	2 cut(s)	224, 333
GluI	GCNGC	3 cut(s)	326, 920, 1011
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	927, 1072
HapII	CCGG	3 cut(s)	591, 923, 1077
HgaI	GACGC	5 cut(s)	199, 310, 583, 793, 827
Hin1I	GRCGYC	2 cut(s)	594, 838
Hin1II	CATG	1 cut(s)	958
HindIII	AAGCTT	2 cut(s)	704, 1136
HinfI	GANTC	1 cut(s)	747
HpaII	CCGG	3 cut(s)	591, 923, 1077
HphI	GGTGA	3 cut(s)	91, 424, 503
Hpy166II	GTNNAC	2 cut(s)	167, 1087
Hpy188I	TCNGA	8 cut(s)	347, 372, 458, 533, 550, 586, 702, 760
Hpy188III	TCNNGA	4 cut(s)	224, 742, 955, 1024
Hpy8I	GTNNAC	2 cut(s)	167, 1087
Hpy99I	CGWCG	3 cut(s)	133, 215, 218
HpyAV	CCTTC	7 cut(s)	97, 212, 553, 581, 918, 1024, 1138
HpyCH4III	ACNGT	2 cut(s)	171, 368
HpyCH4V	TGCA	3 cut(s)	30, 882, 919
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	594, 838
Hsp92II	CATG	1 cut(s)	958
KroI	GCCGGC	1 cut(s)	590
KroNI	GCCGGC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	347, 372, 1036
LguI	GCTCTTC	3 cut(s)	148, 315, 431
LmnI	GCTCC	3 cut(s)	458, 699, 740
Lsp1109I	GCAGC	2 cut(s)	931, 997
LweI	GCATC	2 cut(s)	131, 577
MaeI	CTAG	2 cut(s)	224, 333
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	3 cut(s)	349, 374, 1038
MboI	GATC	3 cut(s)	347, 372, 1036
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	4 cut(s)	65, 143, 580, 696
MluCI	AATT	6 cut(s)	85, 194, 200, 761, 883, 999
MmeI	TCCRAC	4 cut(s)	153, 556, 573, 750
MnlI	CCTC	6 cut(s)	263, 509, 590, 614, 938, 948
MroNI	GCCGGC	1 cut(s)	590
MseI	TTAA	1 cut(s)	84
MspI	CCGG	3 cut(s)	591, 923, 1077
MspR9I	CCNGG	4 cut(s)	473, 924, 943, 1077
MunI	CAATTG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	2 cut(s)	473, 943
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	680
NaeI	GCCGGC	1 cut(s)	592
NciI	CCSGG	2 cut(s)	924, 1077
NdeII	GATC	3 cut(s)	347, 372, 1036
NgoMIV	GCCGGC	1 cut(s)	590
NlaIII	CATG	1 cut(s)	958
NlaIV	GGNNCC	2 cut(s)	736, 774
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	595
PagI	TCATGA	1 cut(s)	954
PasI	CCCWGGG	1 cut(s)	942
PciSI	GCTCTTC	3 cut(s)	148, 315, 431
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	1 cut(s)	858
PdiI	GCCGGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	747
PflFI	GACNNNGTC	1 cut(s)	950
PkrI	GCNGC	3 cut(s)	327, 921, 1012
PshBI	ATTAAT	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	471, 941
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	471, 941
PspN4I	GGNNCC	2 cut(s)	736, 774
PspPI	GGNCC	2 cut(s)	772, 925
PsuI	RGATCY	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	950
RsaI	GTAC	4 cut(s)	331, 365, 447, 1088
RsaNI	GTAC	4 cut(s)	330, 364, 446, 1087
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	3 cut(s)	148, 315, 431
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	326, 920, 1011
Sau3AI	GATC	3 cut(s)	347, 372, 1036
Sau96I	GGNCC	2 cut(s)	772, 925
ScaI	AGTACT	1 cut(s)	447
ScrFI	CCNGG	4 cut(s)	473, 924, 943, 1077
SduI	GDGCHC	4 cut(s)	65, 143, 580, 696
SfaNI	GCATC	2 cut(s)	131, 577
SinI	GGWCC	1 cut(s)	772
SmlI	CTYRAG	2 cut(s)	852, 1139
SmoI	CTYRAG	2 cut(s)	852, 1139
Sse9I	AATT	6 cut(s)	85, 194, 200, 761, 883, 999
SsiI	CCGC	2 cut(s)	326, 556
SspMI	CTAG	2 cut(s)	224, 333
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	4 cut(s)	471, 922, 941, 1075
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	171, 368
TaqI	TCGA	2 cut(s)	216, 574
TasI	AATT	6 cut(s)	85, 194, 200, 761, 883, 999
TatI	WGTACW	2 cut(s)	445, 1086
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	747
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	72, 651
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	919, 1010
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	17, 308, 330, 639, 1113
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	72, 651
Tth111I	GACNNNGTC	1 cut(s)	950
VpaK11BI	GGWCC	1 cut(s)	772
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	1 cut(s)	761
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	2 cut(s)	224, 333
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.