Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

45160139 .. 45160926

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG336500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTCGTGGTGTTTATGAACACCGATTCTTCACCGATTAAGGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGGTGCTCCATCAGAATCCAAGTTATCAAAAATGCTGGTTCCATCAAGGTTTCGATAATTCTGGCCTTCTTTTTTACCCTCTTAAAATTATGATCGACTTTGGGAAATTTGAGAATACTGTATTATCTAAATTCTTTTGTTCTGTTCTATGTAATTTGAGATTTACAAACTCAGTTAAGGAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

102

Amino Acids

11.68

Weight (kDa)

6.04

Isoelectric Point (pI)

23.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	227, 251
AfiI	CCNNNNNNNGG	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	184
ApoI	RAATTY	2 cut(s)	227, 251
AsuHPI	GGTGA	1 cut(s)	24
BauI	CACGAG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	2 cut(s)	138, 171
BmiI	GGNNCC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	161
BssMI	GATC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
CviJI	RGCY	1 cut(s)	186
CviKI_1	RGCY	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
FaiI	YATR	3 cut(s)	17, 212, 271
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
HaeIII	GGCC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	26, 136
HphI	GGTGA	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	74, 132
LpnPI	CCDG	5 cut(s)	35, 98, 107, 142, 168
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	21, 65, 71
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	5 cut(s)	178, 207, 227, 251, 274
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	3 cut(s)	39, 204, 297
NdeII	GATC	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	26, 136
PspN4I	GGNNCC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	39, 204, 297
Sau3AI	GATC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	4 cut(s)	69, 117, 126, 172
Sse9I	AATT	5 cut(s)	178, 207, 227, 251, 274
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	174, 216
TasI	AATT	5 cut(s)	178, 207, 227, 251, 274
TfiI	GAWTC	2 cut(s)	26, 136
Tru1I	TTAA	3 cut(s)	39, 204, 297
Tru9I	TTAA	3 cut(s)	39, 204, 297
TscAI	CASTG	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	2 cut(s)	227, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.