Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

57628271 .. 57633893

Gene Structure 5623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGTCGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCACATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTTTGCAGTCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCAGTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTAGGCCACCCGGAAATGTGTACTCGCTGAATGAACTTGTTGAGCTTTGGGAGAGTAAGATTGGGAAGAAGCTTGAGAAGGTGTTTGTATCAGAAGAAGAGCTTCTTAAGAAGATTAAAGAGGTGCAAATTGAGATTCTAATGGATCTAGACAAGGTTTCAGTCCCTGCTCTGCTTGTGCTTGAGATTGAGCGCGTTCTTAGCCCAAGTGGAATTGGGGCTATGCTTGTTGGTAGCAGTGGTTTGGCTCCGAATAGCCTGATTAGGGCAAAAAGAGTCCGATGGAATTTGCGGAGGAAGTTGTTGAGGAGGCAGATAAATACAATGGGTTTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

34.61

Weight (kDa)

9.36

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 87	6.2e-16	NmrA-like family
NmrA	PF05368	90 - 247	1.2e-34	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	786
AciI	CCGC	1 cut(s)	883
AclWI	GGATC	2 cut(s)	557, 744
AcsI	RAATTY	2 cut(s)	287, 877
AcuI	CTGAAG	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	171, 364
AfaI	GTAC	2 cut(s)	24, 614
AfiI	CCNNNNNNNGG	2 cut(s)	360, 856
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	345, 577
AluBI	AGCT	6 cut(s)	377, 423, 536, 637, 664, 694
AluI	AGCT	6 cut(s)	377, 423, 536, 637, 664, 694
AlwI	GGATC	2 cut(s)	557, 744
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	451, 596
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	287, 877
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	786
AspS9I	GGNCC	2 cut(s)	298, 451
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	2 cut(s)	47, 80
AvaII	GGWCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	3 cut(s)	289, 319, 867
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BcnI	CCSGG	1 cut(s)	603
BfaI	CTAG	1 cut(s)	740
BfrI	CTTAAG	1 cut(s)	698
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	298, 451
BmiI	GGNNCC	2 cut(s)	300, 840
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	363, 686, 794
BpuMI	CCSGG	1 cut(s)	603
BsaHI	GRCGYC	2 cut(s)	171, 364
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 856
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	360, 856
BseRI	GAGGAG	2 cut(s)	170, 913
BseXI	GCAGC	1 cut(s)	523
Bsh1236I	CGCG	1 cut(s)	786
BshFI	GGCC	2 cut(s)	453, 598
BsiSI	CCGG	2 cut(s)	168, 603
BslFI	GGGAC	4 cut(s)	124, 485, 506, 740
BslI	CCNNNNNNNGG	2 cut(s)	360, 856
BsmFI	GGGAC	4 cut(s)	124, 485, 506, 740
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	453, 598
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	562, 736
BspACI	CCGC	1 cut(s)	883
BspANI	GGCC	2 cut(s)	453, 598
BspFNI	CGCG	1 cut(s)	786
BspLI	GGNNCC	2 cut(s)	300, 840
BspPI	GGATC	2 cut(s)	557, 744
BspQI	GCTCTTC	1 cut(s)	684
BspTI	CTTAAG	1 cut(s)	698
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	562, 736
BssNI	GRCGYC	2 cut(s)	171, 364
BssT1I	CCWWGG	1 cut(s)	467
Bst6I	CTCTTC	3 cut(s)	8, 201, 684
BstACI	GRCGYC	2 cut(s)	171, 364
BstAFI	CTTAAG	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	73, 169
BstDEI	CTNAG	1 cut(s)	791
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	786
BstKTI	GATC	2 cut(s)	565, 739
BstMBI	GATC	2 cut(s)	562, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	792
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	601
BstUI	CGCG	1 cut(s)	786
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	453, 598
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	2 cut(s)	231, 835
BtsIMutI	CAGTG	2 cut(s)	231, 835
Cac8I	GCNNGC	2 cut(s)	73, 169
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	1 cut(s)	786
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	298, 451
CseI	GACGC	3 cut(s)	160, 319, 353
Csp6I	GTAC	2 cut(s)	23, 613
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviQI	GTAC	2 cut(s)	23, 613
DdeI	CTNAG	1 cut(s)	791
DpnI	GATC	2 cut(s)	564, 738
DpnII	GATC	2 cut(s)	562, 736
Eam1104I	CTCTTC	3 cut(s)	8, 201, 684
EarI	CTCTTC	3 cut(s)	8, 201, 684
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	526
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	467
FaiI	YATR	2 cut(s)	417, 815
FalI	AAGNNNNNCTT	6 cut(s)	198, 230, 678, 710, 681, 713
FaqI	GGGAC	4 cut(s)	124, 485, 506, 740
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	1 cut(s)	785
GluI	GCNGC	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	453, 598
HapII	CCGG	2 cut(s)	168, 603
HgaI	GACGC	3 cut(s)	160, 319, 353
HhaI	GCGC	1 cut(s)	786
Hin1I	GRCGYC	2 cut(s)	171, 364
Hin6I	GCGC	1 cut(s)	784
HinP1I	GCGC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	3 cut(s)	273, 727, 867
HpaII	CCGG	2 cut(s)	168, 603
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	8 cut(s)	35, 110, 127, 163, 286, 685, 843, 872
Hpy188III	TCNNGA	3 cut(s)	481, 550, 740
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	5 cut(s)	130, 158, 444, 550, 664
HpyCH4V	TGCA	3 cut(s)	408, 445, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	792
HpyF3I	CTNAG	1 cut(s)	791
Hsp92I	GRCGYC	2 cut(s)	171, 364
HspAI	GCGC	1 cut(s)	784
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	562, 736
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	2 cut(s)	221, 844
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	740
MaeIII	GTNAC	3 cut(s)	53, 172, 478
MalI	GATC	2 cut(s)	564, 738
MboI	GATC	2 cut(s)	562, 736
MboII	GAAGA	9 cut(s)	19, 22, 25, 212, 218, 670, 698, 701, 715
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	6 cut(s)	287, 409, 525, 720, 804, 877
MlyI	GAGTC	1 cut(s)	876
MmeI	TCCRAC	4 cut(s)	133, 150, 199, 276
MnlI	CCTC	9 cut(s)	86, 167, 191, 464, 474, 706, 879, 891, 894
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	3 cut(s)	699, 708, 923
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	2 cut(s)	168, 603
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	384
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	1 cut(s)	792
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	603
NdeII	GATC	2 cut(s)	562, 736
NgoMIV	GCCGGC	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	300, 840
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	3 cut(s)	53, 172, 478
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	273, 727
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	300, 840
PspPI	GGNCC	2 cut(s)	298, 451
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	736
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	2 cut(s)	24, 614
RsaNI	GTAC	2 cut(s)	23, 613
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	699, 708, 923
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	2 cut(s)	562, 736
Sau96I	GGNCC	2 cut(s)	298, 451
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	1 cut(s)	876
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	4 cut(s)	378, 665, 698, 773
SmoI	CTYRAG	4 cut(s)	378, 665, 698, 773
Sse9I	AATT	6 cut(s)	287, 409, 525, 720, 804, 877
SsiI	CCGC	1 cut(s)	883
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	1 cut(s)	467
TaqI	TCGA	1 cut(s)	151
TasI	AATT	6 cut(s)	287, 409, 525, 720, 804, 877
TatI	WGTACW	2 cut(s)	22, 612
TfiI	GAWTC	2 cut(s)	273, 727
Tru1I	TTAA	3 cut(s)	699, 708, 923
Tru9I	TTAA	3 cut(s)	699, 708, 923
TscAI	CASTG	2 cut(s)	231, 835
TseFI	GTSAC	3 cut(s)	53, 172, 478
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	3 cut(s)	53, 172, 478
TspDTI	ATGAA	2 cut(s)	265, 639
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	231, 835
Tth111I	GACNNNGTC	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	287, 877
XbaI	TCTAGA	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	740
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.