Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

6847608 .. 6852338

Gene Structure 4731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGTGGGAGATTTTGGGTTATAAGGTCGGGTGCAACCAGAAATGGAGAAGAAGAAGAGTAGAGTACGATAATCGGAGCAACAGAAATGCGGGTCACCATTTAGCCAATGCCGGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGTCGTACCCTTGTTTCCATTTGTGGCTCTTAACCATCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCATGATTTTCGGGGACGGAAATACTAAAGGCCACCCCGGAAATGTGTACTCGCTGAATGAACTTGTTGAGCTTTGGGAGAGTAAGATTAGGAAGAAGCTTGAGAAGGTGTTTGTATCGGAAGAAGAGCTTCTTAAGAAGATTAAAGGGGATCTAGACAAGGTTTCGGTCCACTCTCTGCTTGTGCTCGAGATTGAGCGCGTTCTTAGCCCAAGTGGAATTGGGGCTATGCTTGTTGGTAGCAGTGGTTTGGCTTCGAATAGCCCGATTAGGAAGCAAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

9.6

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	574
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	3 cut(s)	68, 234, 344
AflII	CTTAAG	1 cut(s)	428
AluBI	AGCT	3 cut(s)	367, 394, 424
AluI	AGCT	3 cut(s)	367, 394, 424
Alw21I	GWGCWC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	453
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	3 cut(s)	115, 268, 325
ApoI	RAATTY	1 cut(s)	574
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	268, 463
AsuC2I	CCSGG	2 cut(s)	267, 333
AsuHPI	GGTGA	2 cut(s)	89, 122
AsuII	TTCGAA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	483
BccI	CCATC	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	267, 333
BfaI	CTAG	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	428
Bme1390I	CCNGG	2 cut(s)	267, 333
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	268, 463
BmrFI	CCNGG	2 cut(s)	267, 333
BmsI	GCATC	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	267, 333
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	284, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse118I	RCCGGY	2 cut(s)	113, 209
BseDI	CCNNGG	2 cut(s)	284, 331
BseGI	GGATG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	117, 270, 327
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	4 cut(s)	114, 210, 266, 333
BslFI	GGGAC	3 cut(s)	166, 302, 323
BsmFI	GGGAC	3 cut(s)	166, 302, 323
BsnI	GGCC	3 cut(s)	117, 270, 327
BsoBI	CYCGRG	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	199, 483
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	3 cut(s)	117, 270, 327
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	297
BspPI	GGATC	1 cut(s)	453
BspQI	GCTCTTC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	428
BsrFI	RCCGGY	2 cut(s)	113, 209
BssAI	RCCGGY	2 cut(s)	113, 209
BssECI	CCNNGG	2 cut(s)	284, 331
BssMI	GATC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	52, 414
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	115, 211
BstDEI	CTNAG	1 cut(s)	500
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	265, 331
BstUI	CGCG	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	117, 270, 327
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	2 cut(s)	115, 211
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	2 cut(s)	113, 209
Cfr13I	GGNCC	2 cut(s)	268, 463
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	67, 233, 343
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	3 cut(s)	67, 233, 343
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	52, 414
EarI	CTCTTC	2 cut(s)	52, 414
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	24, 299, 524, 580
FalI	AAGNNNNNCTT	4 cut(s)	408, 440, 411, 443
FaqI	GGGAC	3 cut(s)	166, 302, 323
FatI	CATG	1 cut(s)	297
FauI	CCCGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	117, 270, 327
HapII	CCGG	4 cut(s)	114, 210, 266, 333
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	392
HpaII	CCGG	4 cut(s)	114, 210, 266, 333
HphI	GGTGA	2 cut(s)	89, 122
Hpy166II	GTNNAC	2 cut(s)	343, 466
Hpy188I	TCNGA	5 cut(s)	78, 152, 169, 205, 415
Hpy188III	TCNNGA	3 cut(s)	298, 449, 484
Hpy8I	GTNNAC	2 cut(s)	343, 466
HpyAV	CCTTC	3 cut(s)	172, 200, 394
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	1 cut(s)	500
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	493
KroI	GCCGGC	2 cut(s)	113, 209
KroNI	GCCGGC	2 cut(s)	115, 211
Kzo9I	GATC	1 cut(s)	445
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	53, 127, 223, 279, 346
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	95, 214
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	7 cut(s)	63, 66, 69, 400, 428, 431, 445
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	199, 483
MluCI	AATT	2 cut(s)	513, 574
MmeI	TCCRAC	2 cut(s)	175, 192
MnlI	CCTC	5 cut(s)	128, 209, 233, 281, 291
MroNI	GCCGGC	2 cut(s)	113, 209
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	3 cut(s)	258, 429, 438
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	4 cut(s)	114, 210, 266, 333
MspR9I	CCNGG	2 cut(s)	267, 333
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	501
NaeI	GCCGGC	2 cut(s)	115, 211
NciI	CCSGG	2 cut(s)	267, 333
NdeII	GATC	1 cut(s)	445
NgoMIV	GCCGGC	2 cut(s)	113, 209
NlaIII	CATG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	95, 214
NspV	TTCGAA	1 cut(s)	551
PaeR7I	CTCGAG	1 cut(s)	482
PagI	TCATGA	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 557
PdiI	GCCGGC	2 cut(s)	115, 211
PdmI	GAANNNNTTC	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	293
PsiI	TTATAA	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	268, 463
PsuI	RGATCY	1 cut(s)	445
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	68, 234, 344
RsaNI	GTAC	3 cut(s)	67, 233, 343
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	258, 429, 438
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	2 cut(s)	268, 463
ScrFI	CCNGG	2 cut(s)	267, 333
SduI	GDGCHC	2 cut(s)	199, 483
SetI	ASST	8 cut(s)	30, 164, 192, 369, 396, 405, 426, 459
SfaNI	GCATC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	482
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	482
SmlI	CTYRAG	3 cut(s)	395, 428, 482
SmoI	CTYRAG	3 cut(s)	395, 428, 482
Sse9I	AATT	2 cut(s)	513, 574
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	265, 331
StyI	CCWWGG	1 cut(s)	284
TaqI	TCGA	3 cut(s)	193, 483, 551
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	2 cut(s)	513, 574
TatI	WGTACW	1 cut(s)	342
Tru1I	TTAA	3 cut(s)	258, 429, 438
Tru9I	TTAA	3 cut(s)	258, 429, 438
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	95, 214
Tsp45I	GTSAC	2 cut(s)	95, 214
TspDTI	ATGAA	2 cut(s)	369, 567
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	544
Tth111I	GACNNNGTC	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	574
XbaI	TCTAGA	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.