Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001904.1

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

144999 .. 145572

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001904.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgggcgagcagcttttgaacggtgataaggctctctgtgtcggtgaaggatcggcctcggccgtgatggcgttgcaagatttggggtttcccaatgctcgtgaaatggagaagaagaagagtagagtaacgataatcagagcaacaggaaatctgggtcaccatttagccaatgccagcctccatttctctcaccctactttcgctctcgtccaacccgacaccttctccgacccccacaagtcccaaaaccttcgagccctctccgatgccagcgtcacactcctccaagtcgtacccttgtttccatttgtggctcttaaccatgttcgaatagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

113

Amino Acids

12.21

Weight (kDa)

8.01

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	54, 60
ApeKI	GCWGC	1 cut(s)	10
AsuHPI	GGTGA	4 cut(s)	35, 56, 152, 185
AsuII	TTCGAA	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
BseDI	CCNNGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	56, 62
BsiEI	CGRYCG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	56, 62
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	56, 62
BspPI	GGATC	1 cut(s)	58
BspT104I	TTCGAA	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	8, 178, 274
BstEII	GGTNACC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstPI	GGTNACC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	56, 62
Cac8I	GCNNGC	3 cut(s)	8, 178, 274
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	13, 32, 56, 62, 170, 180, 260, 317
CviKI_1	RGCY	8 cut(s)	13, 32, 56, 62, 170, 180, 260, 317
CviQI	GTAC	1 cut(s)	296
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	1 cut(s)	329
FaiI	YATR	1 cut(s)	327
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	56, 62
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	1 cut(s)	329
HphI	GGTGA	4 cut(s)	35, 56, 152, 185
Hpy188I	TCNGA	3 cut(s)	140, 232, 268
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	41, 235, 263
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	132, 140, 190, 286
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	259
MaeIII	GTNAC	3 cut(s)	127, 158, 277
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	3 cut(s)	124, 127, 130
MhlI	GDGCHC	1 cut(s)	262
MmeI	TCCRAC	2 cut(s)	238, 255
MnlI	CCTC	4 cut(s)	67, 191, 272, 296
MseI	TTAA	2 cut(s)	321, 340
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	329
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	158, 277
NspV	TTCGAA	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	321, 340
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	3 cut(s)	15, 227, 255
SfaNI	GCATC	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	256, 331
Tru1I	TTAA	2 cut(s)	321, 340
Tru9I	TTAA	2 cut(s)	321, 340
TseFI	GTSAC	2 cut(s)	158, 277
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	158, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.