Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

27415537 .. 27433316

Gene Structure 17780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG170100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCCCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGTCGGTTCGTTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTAATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAATCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGTCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACATGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGATAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGGTATTGCAAGTTTATTCATTCCATTCACAAGGAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAGGCGTTGGACACATGCTTTACAGCGTATTCATAAACAGTCACTTCATATGGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGGTGGTGGGAGCAATACTGACCGAGCCGGGTGTGAAGGATTGGACATAAGTGGGCCTATCGTGCTGGTTCTCACACAAATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

440

Amino Acids

48.9

Weight (kDa)

6.55

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 198	2.8e-37	NmrA-like family
eIF3a_PCI_TPR-like	PF22591	192 - 311	6e-27	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1155
AccBSI	CCGCTC	1 cut(s)	594
AciI	CCGC	1 cut(s)	592
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	4 cut(s)	287, 315, 684, 1140
AcuI	CTGAAG	1 cut(s)	731
AcyI	GRCGYC	2 cut(s)	171, 364
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflII	CTTAAG	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	845
AgsI	TTSAA	6 cut(s)	345, 577, 602, 733, 872, 1170
AjiI	CACGTC	1 cut(s)	1045
AluBI	AGCT	9 cut(s)	377, 423, 536, 676, 756, 1118, 1193, 1205, 1230
AluI	AGCT	9 cut(s)	377, 423, 536, 676, 756, 1118, 1193, 1205, 1230
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	451, 1289
ApeKI	GCWGC	6 cut(s)	445, 536, 815, 851, 1193, 1216
ApoI	RAATTY	4 cut(s)	287, 315, 684, 1140
AseI	ATTAAT	1 cut(s)	617
Asp700I	GAANNNNTTC	2 cut(s)	606, 996
AspLEI	GCGC	2 cut(s)	888, 1156
AspS9I	GGNCC	4 cut(s)	298, 451, 1133, 1289
AsuC2I	CCSGG	2 cut(s)	450, 1264
AsuHPI	GGTGA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	298, 1133
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	6 cut(s)	457, 523, 802, 838, 1180, 1228
BccI	CCATC	5 cut(s)	289, 319, 649, 655, 892
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	2 cut(s)	450, 1264
BfaI	CTAG	2 cut(s)	702, 1202
BfrI	CTTAAG	1 cut(s)	769
BisI	GCNGC	6 cut(s)	446, 537, 816, 852, 1194, 1217
BlsI	GCNGC	6 cut(s)	447, 538, 817, 853, 1195, 1218
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	450, 1264
Bme18I	GGWCC	2 cut(s)	298, 1133
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	4 cut(s)	298, 451, 1133, 1289
BmiI	GGNNCC	2 cut(s)	300, 1134
BmrFI	CCNGG	2 cut(s)	450, 1264
BmsI	GCATC	2 cut(s)	154, 806
BmtI	GCTAGC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	2 cut(s)	450, 1264
BsaHI	GRCGYC	2 cut(s)	171, 364
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 936, 966
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	330, 903
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseRI	GAGGAG	2 cut(s)	170, 957
BseXI	GCAGC	6 cut(s)	457, 523, 802, 838, 1180, 1228
BsgI	GTGCAG	2 cut(s)	464, 801
BshFI	GGCC	2 cut(s)	453, 1291
BsiSI	CCGG	3 cut(s)	168, 449, 1263
BslFI	GGGAC	3 cut(s)	124, 485, 506
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	124, 485, 506
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	453, 1291
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	562, 838
BspACI	CCGC	1 cut(s)	592
BspANI	GGCC	2 cut(s)	453, 1291
BspLI	GGNNCC	2 cut(s)	300, 1134
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	562, 838
BssNI	GRCGYC	2 cut(s)	171, 364
BssT1I	CCWWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	1039, 1098
Bst6I	CTCTTC	4 cut(s)	8, 201, 1002, 1018
BstACI	GRCGYC	2 cut(s)	171, 364
BstAFI	CTTAAG	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	73, 169, 703
BstDEI	CTNAG	1 cut(s)	1145
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	330, 903
BstHHI	GCGC	2 cut(s)	888, 1156
BstKTI	GATC	2 cut(s)	565, 841
BstMBI	GATC	2 cut(s)	562, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	1202, 1297
BstNSI	RCATGY	2 cut(s)	849, 1076
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	448, 1262
BstV1I	GCAGC	6 cut(s)	457, 523, 802, 838, 1180, 1228
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	453, 1291
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	2 cut(s)	330, 903
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	73, 169, 703
CfoI	GCGC	2 cut(s)	888, 1156
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	298, 451, 1133, 1289
CseI	GACGC	3 cut(s)	160, 319, 353
Csp6I	GTAC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	8 cut(s)	611, 625, 716, 726, 846, 1073, 1157, 1178
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	1145
DpnI	GATC	2 cut(s)	564, 840
DpnII	GATC	2 cut(s)	562, 838
Eam1104I	CTCTTC	4 cut(s)	8, 201, 1002, 1018
EarI	CTCTTC	4 cut(s)	8, 201, 1002, 1018
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	298, 1133
Eco57I	CTGAAG	1 cut(s)	731
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	8 cut(s)	614, 628, 719, 729, 849, 1076, 1160, 1181
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	3 cut(s)	124, 485, 506
FatI	CATG	8 cut(s)	610, 624, 715, 725, 845, 1072, 1156, 1177
FauNDI	CATATG	1 cut(s)	1107
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	6 cut(s)	446, 537, 816, 852, 1194, 1217
FokI	GGATG	2 cut(s)	337, 910
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	6 cut(s)	446, 537, 816, 852, 1194, 1217
FspAI	RTGCGCAY	1 cut(s)	1155
FspBI	CTAG	2 cut(s)	702, 1202
FspI	TGCGCA	1 cut(s)	1155
GlaI	GCGC	2 cut(s)	887, 1155
GluI	GCNGC	6 cut(s)	446, 537, 816, 852, 1194, 1217
HaeIII	GGCC	2 cut(s)	453, 1291
HapII	CCGG	3 cut(s)	168, 449, 1263
HgaI	GACGC	3 cut(s)	160, 319, 353
HhaI	GCGC	2 cut(s)	888, 1156
Hin1I	GRCGYC	2 cut(s)	171, 364
Hin1II	CATG	8 cut(s)	614, 628, 719, 729, 849, 1076, 1160, 1181
Hin6I	GCGC	2 cut(s)	886, 1154
HinP1I	GCGC	2 cut(s)	886, 1154
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HindIII	AAGCTT	1 cut(s)	754
HinfI	GANTC	3 cut(s)	273, 1026, 1184
HpaII	CCGG	3 cut(s)	168, 449, 1263
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	664, 1030, 1042
Hpy188I	TCNGA	9 cut(s)	35, 110, 127, 163, 286, 750, 777, 843, 1322
Hpy188III	TCNNGA	4 cut(s)	481, 550, 923, 1136
Hpy8I	GTNNAC	3 cut(s)	664, 1030, 1042
HpyAV	CCTTC	7 cut(s)	130, 158, 444, 550, 772, 1154, 1265
HpyCH4III	ACNGT	2 cut(s)	1039, 1098
HpyCH4IV	ACGT	1 cut(s)	1044
HpyCH4V	TGCA	8 cut(s)	408, 445, 624, 725, 787, 818, 958, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1202, 1297
HpyF3I	CTNAG	1 cut(s)	1145
HpySE526I	ACGT	1 cut(s)	1044
Hsp92I	GRCGYC	2 cut(s)	171, 364
Hsp92II	CATG	8 cut(s)	614, 628, 719, 729, 849, 1076, 1160, 1181
HspAI	GCGC	2 cut(s)	886, 1154
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	2 cut(s)	562, 838
LmnI	GCTCC	2 cut(s)	221, 1245
Lsp1109I	GCAGC	6 cut(s)	457, 523, 802, 838, 1180, 1228
LweI	GCATC	2 cut(s)	154, 806
MaeI	CTAG	2 cut(s)	702, 1202
MaeII	ACGT	1 cut(s)	1044
MaeIII	GTNAC	4 cut(s)	53, 172, 478, 1098
MalI	GATC	2 cut(s)	564, 840
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	2 cut(s)	562, 838
MboII	GAAGA	8 cut(s)	19, 22, 25, 212, 218, 614, 989, 1035
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	9 cut(s)	287, 315, 409, 525, 684, 889, 909, 1053, 1140
MlyI	GAGTC	2 cut(s)	1035, 1193
MmeI	TCCRAC	6 cut(s)	133, 150, 177, 199, 276, 1046
Mph1103I	ATGCAT	1 cut(s)	727
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	2 cut(s)	606, 996
MseI	TTAA	7 cut(s)	617, 630, 711, 759, 770, 791, 918
MslI	CAYNNNNRTG	2 cut(s)	720, 1313
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	3 cut(s)	168, 449, 1263
MspR9I	CCNGG	2 cut(s)	450, 1264
Mva1269I	GAATGC	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	1202, 1297
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	450, 1264
NdeI	CATATG	1 cut(s)	1107
NdeII	GATC	2 cut(s)	562, 838
NgoMIV	GCCGGC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	8 cut(s)	614, 628, 719, 729, 849, 1076, 1160, 1181
NlaIV	GGNNCC	2 cut(s)	300, 1134
NmeAIII	GCCGAG	2 cut(s)	379, 1207
NmuCI	GTSAC	4 cut(s)	53, 172, 478, 1098
NsbI	TGCGCA	1 cut(s)	1155
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	2 cut(s)	849, 1076
PciI	ACATGT	1 cut(s)	845
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	606, 996
PfeI	GAWTC	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	447, 538, 817, 853, 1195, 1218
PleI	GAGTC	2 cut(s)	1034, 1192
PpsI	GAGTC	2 cut(s)	1034, 1192
PscI	ACATGT	1 cut(s)	845
PshBI	ATTAAT	1 cut(s)	617
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	300, 1134
PspPI	GGNCC	4 cut(s)	298, 451, 1133, 1289
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	2 cut(s)	720, 1313
SaqAI	TTAA	7 cut(s)	617, 630, 711, 759, 770, 791, 918
SatI	GCNGC	6 cut(s)	446, 537, 816, 852, 1194, 1217
Sau3AI	GATC	2 cut(s)	562, 838
Sau96I	GGNCC	4 cut(s)	298, 451, 1133, 1289
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	1035, 1193
ScrFI	CCNGG	2 cut(s)	450, 1264
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	154, 806
SinI	GGWCC	2 cut(s)	298, 1133
SmiMI	CAYNNNNRTG	2 cut(s)	720, 1313
SmlI	CTYRAG	2 cut(s)	378, 769
SmoI	CTYRAG	2 cut(s)	378, 769
Sse9I	AATT	9 cut(s)	287, 315, 409, 525, 684, 889, 909, 1053, 1140
SsiI	CCGC	1 cut(s)	592
SspMI	CTAG	2 cut(s)	702, 1202
StyD4I	CCNGG	2 cut(s)	448, 1262
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	1039, 1098
TaiI	ACGT	1 cut(s)	1047
TaqI	TCGA	3 cut(s)	151, 936, 1003
TaqII	GACCGA	1 cut(s)	1272
TasI	AATT	9 cut(s)	287, 315, 409, 525, 684, 889, 909, 1053, 1140
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	7 cut(s)	617, 630, 711, 759, 770, 791, 918
Tru9I	TTAA	7 cut(s)	617, 630, 711, 759, 770, 791, 918
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	4 cut(s)	53, 172, 478, 1098
TseI	GCWGC	6 cut(s)	445, 536, 815, 851, 1193, 1216
Tsp45I	GTSAC	4 cut(s)	53, 172, 478, 1098
TspDTI	ATGAA	8 cut(s)	265, 599, 957, 989, 1005, 1079, 1094, 1173
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	231
Tth111I	GACNNNGTC	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	298, 1133
VspI	ATTAAT	1 cut(s)	617
XapI	RAATTY	4 cut(s)	287, 315, 684, 1140
XceI	RCATGY	2 cut(s)	849, 1076
XmnI	GAANNNNTTC	2 cut(s)	606, 996
XspI	CTAG	2 cut(s)	702, 1202
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.