Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

32867056 .. 32869698

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGGTGCTCCATCAGAATTCAAGGATGGACTACAACTTCTATTCAAACAAAGCTGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAGTTGGTGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGAGATGTGGTATTGCAAGTTTGTTTGTGTTTATTTGTACAGTTTCTTCTTTAGATTCGACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

203

Amino Acids

23.01

Weight (kDa)

9.01

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 91	4.4e-19	NmrA-like family
NAD_binding_10	PF13460	13 - 88	4e-07	NAD(P)H-binding
NmrA	PF05368	97 - 183	3.2e-15	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	610
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	2 cut(s)	171, 328
AfaI	GTAC	2 cut(s)	24, 584
AgsI	TTSAA	3 cut(s)	285, 309, 541
AluBI	AGCT	4 cut(s)	317, 341, 387, 500
AluI	AGCT	4 cut(s)	317, 341, 387, 500
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	409, 500
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	47, 80
BanII	GRGCYC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	421, 487
BccI	CCATC	2 cut(s)	282, 283
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BcnI	CCSGG	1 cut(s)	414
BisI	GCNGC	2 cut(s)	410, 501
BlsI	GCNGC	2 cut(s)	411, 502
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	414
BsaHI	GRCGYC	2 cut(s)	171, 328
BsaJI	CCNNGG	2 cut(s)	184, 431
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 255, 285
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	184, 431
BseGI	GGATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	421, 487
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	168, 413
BslFI	GGGAC	3 cut(s)	124, 449, 470
BsmFI	GGGAC	3 cut(s)	124, 449, 470
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	157, 273
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	1 cut(s)	526
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	184, 431
BssMI	GATC	1 cut(s)	526
BssNI	GRCGYC	2 cut(s)	171, 328
BssT1I	CCWWGG	2 cut(s)	184, 431
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	2 cut(s)	8, 198
BstACI	GRCGYC	2 cut(s)	171, 328
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	73, 169
BstDEI	CTNAG	1 cut(s)	318
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	529
BstMBI	GATC	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	421, 487
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	73, 169
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	2 cut(s)	160, 317
Csp6I	GTAC	2 cut(s)	23, 583
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviJI	RGCY	9 cut(s)	65, 75, 155, 317, 341, 387, 412, 417, 500
CviKI_1	RGCY	9 cut(s)	65, 75, 155, 317, 341, 387, 412, 417, 500
CviQI	GTAC	2 cut(s)	23, 583
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	8, 198
EarI	CTCTTC	2 cut(s)	8, 198
Eco130I	CCWWGG	2 cut(s)	184, 431
Eco24I	GRGCYC	1 cut(s)	157
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	184, 431
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	184, 431
FaiI	YATR	2 cut(s)	381, 610
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	3 cut(s)	124, 449, 470
Fnu4HI	GCNGC	2 cut(s)	410, 501
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	410, 501
GluI	GCNGC	2 cut(s)	410, 501
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	2 cut(s)	168, 413
HgaI	GACGC	2 cut(s)	160, 317
Hin1I	GRCGYC	2 cut(s)	171, 328
HinfI	GANTC	1 cut(s)	600
HpaII	CCGG	2 cut(s)	168, 413
HphI	GGTGA	2 cut(s)	47, 80
Hpy188I	TCNGA	5 cut(s)	35, 110, 127, 163, 279
Hpy188III	TCNNGA	2 cut(s)	445, 514
HpyAV	CCTTC	4 cut(s)	130, 158, 408, 514
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	3 cut(s)	372, 409, 561
HpyF3I	CTNAG	1 cut(s)	318
Hsp92I	GRCGYC	2 cut(s)	171, 328
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	2 cut(s)	218, 276
Lsp1109I	GCAGC	2 cut(s)	421, 487
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	53, 172, 442
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	6 cut(s)	19, 22, 25, 209, 215, 583
MhlI	GDGCHC	2 cut(s)	157, 273
MluCI	AATT	2 cut(s)	280, 373
MmeI	TCCRAC	3 cut(s)	133, 150, 196
MnlI	CCTC	5 cut(s)	86, 167, 191, 428, 438
MroNI	GCCGGC	1 cut(s)	167
MspI	CCGG	2 cut(s)	168, 413
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	348
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	526
NgoMIV	GCCGGC	1 cut(s)	167
NmuCI	GTSAC	3 cut(s)	53, 172, 442
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	411, 502
PsiI	TTATAA	1 cut(s)	610
PspEI	GGTNACC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	2 cut(s)	24, 584
RsaNI	GTAC	2 cut(s)	23, 583
SatI	GCNGC	2 cut(s)	410, 501
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	1 cut(s)	415
ScaI	AGTACT	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	157, 273
SfaNI	GCATC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	2 cut(s)	280, 373
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	2 cut(s)	184, 431
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	2 cut(s)	151, 603
TasI	AATT	2 cut(s)	280, 373
TatI	WGTACW	2 cut(s)	22, 582
TfiI	GAWTC	1 cut(s)	600
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	53, 172, 442
TseI	GCWGC	2 cut(s)	409, 500
Tsp45I	GTSAC	3 cut(s)	53, 172, 442
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	280
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.