Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

20581599 .. 20584342

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGAAGAAGGAGAGCAGAGTACTGATAATCGGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCGCAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGATGAAGAGAGCCTTGTTGAAGCAGTGAAGCAAGTTGATGTTGTTGTTTGTGCTGTTCAGGCCAAACAGGTGCTCCATCAGAAGCTTCTTATCCAAGTTATCAAAAATGCTGGCTCCATCAAGAGATTCGTTCCATCAGAATTTGGGTTGGACCCAGATAAGACGCAGATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTGTTTCCTGCAATTTCTATATGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCCAGGGACAAAGTCACGATTTTTGGGGATGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAAGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTATGCCACCCGGAAATGTGTACTCGCTGAATGAACTTGTTGAGCTTTGGGAGAGTAAGATTGGGAAGAAGCTTGAGAAGGTGTTTGTTTCAGAAGAAGAGCTTCTTAAGAAGATTAAAGGTACTTCTTCTGGTTCATACTATTTGGGTATTTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

267

Amino Acids

29.68

Weight (kDa)

8.35

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 253	1.1e-69	NmrA-like family
NAD_binding_10	PF13460	12 - 206	4.8e-16	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	2 cut(s)	171, 415
AfaI	GTAC	3 cut(s)	24, 665, 766
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	3 cut(s)	218, 396, 628
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	7 cut(s)	283, 428, 474, 587, 688, 715, 745
AluI	AGCT	7 cut(s)	283, 428, 474, 587, 688, 715, 745
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	2 cut(s)	258, 502
ApeKI	GCWGC	2 cut(s)	496, 587
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	744
AspS9I	GGNCC	2 cut(s)	349, 502
AsuC2I	CCSGG	2 cut(s)	501, 654
AsuHPI	GGTGA	2 cut(s)	47, 80
AvaII	GGWCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	508, 574
BccI	CCATC	5 cut(s)	282, 323, 340, 370, 539
BciT130I	CCWGG	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	501, 654
BfrI	CTTAAG	1 cut(s)	749
BisI	GCNGC	2 cut(s)	497, 588
BlsI	GCNGC	2 cut(s)	498, 589
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	501, 520, 654
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	349, 502
BmiI	GGNNCC	2 cut(s)	313, 351
BmrFI	CCNGG	3 cut(s)	501, 520, 654
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	414, 737
BpuMI	CCSGG	2 cut(s)	501, 654
BsaHI	GRCGYC	2 cut(s)	171, 415
BsaJI	CCNNGG	3 cut(s)	184, 518, 519
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	3 cut(s)	184, 518, 519
BseGI	GGATG	2 cut(s)	381, 550
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	508, 574
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	260, 504
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	168, 500, 654
BslFI	GGGAC	2 cut(s)	124, 536
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	124, 536
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	2 cut(s)	260, 504
Bsp1286I	GDGCHC	2 cut(s)	157, 273
Bsp143I	GATC	1 cut(s)	613
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	260, 504
BspLI	GGNNCC	2 cut(s)	313, 351
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	184, 518, 519
BssMI	GATC	1 cut(s)	613
BssNI	GRCGYC	2 cut(s)	171, 415
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	198, 735
BstACI	GRCGYC	2 cut(s)	171, 415
BstAFI	CTTAAG	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	73, 169, 310
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	381, 550
BstKTI	GATC	1 cut(s)	616
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	520
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	499, 518, 652
BstV1I	GCAGC	2 cut(s)	508, 574
BsuRI	GGCC	2 cut(s)	260, 504
BtsCI	GGATG	2 cut(s)	381, 550
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	73, 169, 310
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	349, 502
CseI	GACGC	3 cut(s)	160, 370, 404
Csp6I	GTAC	3 cut(s)	23, 664, 765
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviQI	GTAC	3 cut(s)	23, 664, 765
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	198, 735
EarI	CTCTTC	2 cut(s)	198, 735
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	184
FaiI	YATR	4 cut(s)	468, 470, 647, 781
FalI	AAGNNNNNCTT	6 cut(s)	195, 227, 729, 761, 732, 764
FaqI	GGGAC	2 cut(s)	124, 536
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	497, 588
FokI	GGATG	2 cut(s)	388, 557
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	497, 588
GluI	GCNGC	2 cut(s)	497, 588
HaeIII	GGCC	2 cut(s)	260, 504
HapII	CCGG	3 cut(s)	168, 500, 654
HgaI	GACGC	3 cut(s)	160, 370, 404
Hin1I	GRCGYC	2 cut(s)	171, 415
HindIII	AAGCTT	2 cut(s)	281, 713
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	3 cut(s)	168, 500, 654
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	7 cut(s)	35, 110, 127, 163, 279, 337, 736
Hpy188III	TCNNGA	3 cut(s)	319, 532, 601
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	6 cut(s)	4, 130, 158, 495, 601, 715
HpyCH4V	TGCA	2 cut(s)	459, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92I	GRCGYC	2 cut(s)	171, 415
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	613
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	3 cut(s)	35, 276, 317
Lsp1109I	GCAGC	2 cut(s)	508, 574
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	53, 172, 529
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	8 cut(s)	19, 209, 215, 721, 749, 752, 762, 766
MhlI	GDGCHC	2 cut(s)	157, 273
MluCI	AATT	3 cut(s)	338, 460, 576
MmeI	TCCRAC	3 cut(s)	133, 150, 327
MnlI	CCTC	5 cut(s)	86, 167, 191, 515, 525
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	2 cut(s)	750, 759
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	3 cut(s)	168, 500, 654
MspR9I	CCNGG	3 cut(s)	501, 520, 654
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	257
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	501, 654
NdeII	GATC	1 cut(s)	613
NgoMIV	GCCGGC	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	313, 351
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	3 cut(s)	53, 172, 529
PasI	CCCWGGG	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	498, 589
Psp6I	CCWGG	1 cut(s)	518
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	2 cut(s)	313, 351
PspPI	GGNCC	2 cut(s)	349, 502
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	3 cut(s)	24, 665, 766
RsaNI	GTAC	3 cut(s)	23, 664, 765
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	750, 759
SatI	GCNGC	2 cut(s)	497, 588
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	2 cut(s)	349, 502
ScaI	AGTACT	1 cut(s)	24
ScrFI	CCNGG	3 cut(s)	501, 520, 654
SduI	GDGCHC	2 cut(s)	157, 273
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	3 cut(s)	429, 716, 749
SmoI	CTYRAG	3 cut(s)	429, 716, 749
Sse9I	AATT	3 cut(s)	338, 460, 576
SsiI	CCGC	1 cut(s)	133
StyD4I	CCNGG	3 cut(s)	499, 518, 652
StyI	CCWWGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	338, 460, 576
TatI	WGTACW	2 cut(s)	22, 663
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	750, 759
Tru9I	TTAA	2 cut(s)	750, 759
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	53, 172, 529
TseI	GCWGC	2 cut(s)	496, 587
Tsp45I	GTSAC	3 cut(s)	53, 172, 529
TspDTI	ATGAA	3 cut(s)	216, 690, 768
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	527
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.