Rh5DG123400

isoflavone

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
11205060 .. 11205600
541 bp
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UTR
Exon/CDS
Intron
Rh5DG123400.1

Sequence Viewer

Length: 453 bp
ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAAGTGCTCCATCAGAATCCAAGTTATCAAAAATGCTGGTTCCATCAAGGTTTCGATAATTCTGGCCTTCTTTTTTACCCTCTTAAAATTATGATCGACTTTGGGAAATTTGAGAATACTGTATTATCTAAATTCTTTTGTTCTGTTCTATGTAATTTGAGATTTACAAACTCAGTTAAGGAGTGGTGA

Protein Analysis

150

Amino Acids

16.95

Weight (kDa)

8.72

Isoelectric Point (pI)

21.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 4 - 90 2.4e-19 NmrA-like family
NAD_binding_10 PF13460 13 - 88 2e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 371, 395
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 273
AoxI GGCC 1 cut(s) 328
ApoI RAATTY 2 cut(s) 371, 395
AsuHPI GGTGA 2 cut(s) 47, 80
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 2 cut(s) 282, 315
BmcAI AGTACT 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 305
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 255, 285
Bse118I RCCGGY 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 170
BshFI GGCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 157, 273
Bsp143I GATC 1 cut(s) 357
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 357
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 2 cut(s) 8, 198
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 73, 169
BstDEI CTNAG 1 cut(s) 436
BstEII GGTNACC 1 cut(s) 53
BstKTI GATC 1 cut(s) 360
BstMBI GATC 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 73, 169
Cfr10I RCCGGY 1 cut(s) 167
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 4 cut(s) 65, 75, 155, 330
CviKI_1 RGCY 4 cut(s) 65, 75, 155, 330
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 436
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 8, 198
EarI CTCTTC 2 cut(s) 8, 198
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 157
Eco91I GGTNACC 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 184
FaiI YATR 2 cut(s) 356, 415
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 171
HinfI GANTC 1 cut(s) 280
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 47, 80
Hpy188I TCNGA 5 cut(s) 35, 110, 127, 163, 279
HpyAV CCTTC 3 cut(s) 130, 158, 341
HpyCH4III ACNGT 1 cut(s) 385
HpyF3I CTNAG 1 cut(s) 436
Hsp92I GRCGYC 1 cut(s) 171
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 218, 276
LpnPI CCDG 8 cut(s) 27, 35, 85, 179, 181, 242, 286, 312
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 53, 172
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 5 cut(s) 19, 22, 25, 209, 215
MhlI GDGCHC 2 cut(s) 157, 273
MluCI AATT 5 cut(s) 322, 351, 371, 395, 418
MmeI TCCRAC 3 cut(s) 133, 150, 196
MnlI CCTC 4 cut(s) 86, 167, 191, 354
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 2 cut(s) 348, 441
MspI CCGG 1 cut(s) 168
NaeI GCCGGC 1 cut(s) 169
NdeII GATC 1 cut(s) 357
NgoMIV GCCGGC 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 53, 172
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 305
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 348, 441
Sau3AI GATC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 24
SduI GDGCHC 2 cut(s) 157, 273
SetI ASST 6 cut(s) 122, 150, 190, 213, 261, 316
SfaNI GCATC 1 cut(s) 154
Sse9I AATT 5 cut(s) 322, 351, 371, 395, 418
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 3 cut(s) 151, 318, 360
TasI AATT 5 cut(s) 322, 351, 371, 395, 418
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 2 cut(s) 348, 441
Tru9I TTAA 2 cut(s) 348, 441
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 2 cut(s) 53, 172
Tsp45I GTSAC 2 cut(s) 53, 172
TspRI CASTG 1 cut(s) 228
XapI RAATTY 2 cut(s) 371, 395
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.