Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002012.1

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

87255 .. 88830

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002012.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgggcgagcagcttttgaacggtgataaggctctctgtgtcggtgaaggatcggcctcggccgtgatggcgttgcaagatttggggtttcccaatgctcgtgaaatggagaagaagaagagtagagtactgataatcagagcaacaggaaatctgggtcaccatttagccaatgccagcctccatttctctcaccccactttcgctctcgtccgacccgacaccttctccgacccccacaagtcccaaaaccttcgagccctctccgatgccggcgtcacactcctccaagtcggttcgctggaagacgaagagaaccttgttggagcagtgaagcaagttgatgttgtgatttgtgctgttcaggtcaaacagagattcattccatcagaattcgggttggacccagataagacgcaaatttcagggatggactacaacttctattcaaacaaagccgagattaggcgtcttgtggaagctcaaggcattccctacacttttatttcctgcaatttctatacgagctatttgcttccttcacttgtgcagccgggcctcaaagtgcctccaagggacaaagtcacgattttcggggacggaaatactaaaggcgtttttgtcaaggaaattgatgtagctgccttcactatcaggacattggacgatccacgaaccttgaacaaagtgttgtattttaggccacccggaaatgtgtactcgctgaatgaacttgttgagctttgggagagtaagattgggaagaagcttgagaaggtgtttgtatcagaagaagagcttcttaagaagagtaaaggtacttcttctagttcatactatttgggtatttcacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

285

Amino Acids

31.5

Weight (kDa)

6.97

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	58, 662
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	392, 420
AcyI	GRCGYC	2 cut(s)	276, 469
AfaI	GTAC	3 cut(s)	129, 719, 820
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	19, 450, 682
AluBI	AGCT	7 cut(s)	13, 482, 528, 641, 742, 769, 799
AluI	AGCT	7 cut(s)	13, 482, 528, 641, 742, 769, 799
AlwI	GGATC	2 cut(s)	58, 662
AoxI	GGCC	4 cut(s)	54, 60, 556, 701
ApeKI	GCWGC	3 cut(s)	10, 550, 641
ApoI	RAATTY	2 cut(s)	392, 420
Asp700I	GAANNNNTTC	1 cut(s)	798
AspS9I	GGNCC	2 cut(s)	403, 556
AsuC2I	CCSGG	2 cut(s)	555, 708
AsuHPI	GGTGA	4 cut(s)	35, 56, 152, 185
AvaII	GGWCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	805, 837
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	22, 562, 628
BccI	CCATC	3 cut(s)	61, 394, 424
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BcnI	CCSGG	2 cut(s)	555, 708
BfaI	CTAG	1 cut(s)	828
BfrI	CTTAAG	1 cut(s)	803
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	11, 551, 642
BlsI	GCNGC	3 cut(s)	12, 552, 643
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	555, 708
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	403, 556
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	555, 708
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	468, 791
BpuMI	CCSGG	2 cut(s)	555, 708
BsaHI	GRCGYC	2 cut(s)	276, 469
BsaJI	CCNNGG	2 cut(s)	57, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	57, 572
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseRI	GAGGAG	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	22, 562, 628
BsgI	GTGCAG	1 cut(s)	569
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	56, 62, 558, 703
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	273, 554, 708
BslFI	GGGAC	3 cut(s)	229, 590, 611
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmFI	GGGAC	3 cut(s)	229, 590, 611
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	4 cut(s)	56, 62, 558, 703
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	50, 667
BspANI	GGCC	4 cut(s)	56, 62, 558, 703
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	58, 662
BspQI	GCTCTTC	1 cut(s)	789
BspTI	CTTAAG	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	57, 572
BssMI	GATC	2 cut(s)	50, 667
BssNI	GRCGYC	2 cut(s)	276, 469
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	572
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	4 cut(s)	113, 306, 789, 803
BstACI	GRCGYC	2 cut(s)	276, 469
BstAFI	CTTAAG	1 cut(s)	803
BstC8I	GCNNGC	3 cut(s)	8, 178, 274
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	2 cut(s)	53, 670
BstMBI	GATC	2 cut(s)	50, 667
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	553, 706
BstV1I	GCAGC	3 cut(s)	22, 562, 628
BstV2I	GAAGAC	1 cut(s)	312
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	56, 62, 558, 703
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	8, 178, 274
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	403, 556
CseI	GACGC	3 cut(s)	265, 424, 458
Csp6I	GTAC	3 cut(s)	128, 718, 819
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CviQI	GTAC	3 cut(s)	128, 718, 819
DpnI	GATC	2 cut(s)	52, 669
DpnII	GATC	2 cut(s)	50, 667
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	4 cut(s)	113, 306, 789, 803
EarI	CTCTTC	4 cut(s)	113, 306, 789, 803
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	403
Eco52I	CGGCCG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	572
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	572
FaiI	YATR	2 cut(s)	522, 835
FalI	AAGNNNNNCTT	6 cut(s)	303, 335, 783, 815, 786, 818
FaqI	GGGAC	3 cut(s)	229, 590, 611
Fnu4HI	GCNGC	3 cut(s)	11, 551, 642
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	11, 551, 642
FspBI	CTAG	1 cut(s)	828
GluI	GCNGC	3 cut(s)	11, 551, 642
HaeIII	GGCC	4 cut(s)	56, 62, 558, 703
HapII	CCGG	3 cut(s)	273, 554, 708
HgaI	GACGC	3 cut(s)	265, 424, 458
Hin1I	GRCGYC	2 cut(s)	276, 469
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	3 cut(s)	273, 554, 708
HphI	GGTGA	4 cut(s)	35, 56, 152, 185
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	6 cut(s)	140, 215, 232, 268, 391, 790
Hpy188III	TCNNGA	3 cut(s)	101, 586, 655
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	6 cut(s)	41, 235, 263, 549, 655, 769
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	76, 513, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92I	GRCGYC	2 cut(s)	276, 469
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	50, 667
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	22, 562, 628
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	158, 277, 583
MalI	GATC	2 cut(s)	52, 669
MboI	GATC	2 cut(s)	50, 667
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	4 cut(s)	392, 420, 514, 630
MmeI	TCCRAC	4 cut(s)	238, 255, 304, 381
MnlI	CCTC	6 cut(s)	67, 191, 272, 296, 569, 579
MroNI	GCCGGC	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	1 cut(s)	804
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	3 cut(s)	273, 554, 708
MspR9I	CCNGG	2 cut(s)	555, 708
Mva1269I	GAATGC	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	68
NaeI	GCCGGC	1 cut(s)	274
NciI	CCSGG	2 cut(s)	555, 708
NdeII	GATC	2 cut(s)	50, 667
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	2 cut(s)	38, 484
NmuCI	GTSAC	3 cut(s)	158, 277, 583
PciSI	GCTCTTC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	1 cut(s)	378
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	12, 552, 643
PspEI	GGTNACC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	403, 556
PsyI	GACNNNGTC	1 cut(s)	581
RsaI	GTAC	3 cut(s)	129, 719, 820
RsaNI	GTAC	3 cut(s)	128, 718, 819
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	3 cut(s)	11, 551, 642
Sau3AI	GATC	2 cut(s)	50, 667
Sau96I	GGNCC	2 cut(s)	403, 556
ScaI	AGTACT	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	555, 708
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	3 cut(s)	483, 770, 803
SmoI	CTYRAG	3 cut(s)	483, 770, 803
Sse9I	AATT	4 cut(s)	392, 420, 514, 630
SspMI	CTAG	1 cut(s)	828
StyD4I	CCNGG	2 cut(s)	553, 706
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	256
TasI	AATT	4 cut(s)	392, 420, 514, 630
TatI	WGTACW	2 cut(s)	127, 717
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	3 cut(s)	158, 277, 583
TseI	GCWGC	3 cut(s)	10, 550, 641
Tsp45I	GTSAC	3 cut(s)	158, 277, 583
TspDTI	ATGAA	3 cut(s)	370, 744, 822
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	392, 420
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	1 cut(s)	828
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.