Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

8004012 .. 8006046

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09101.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGAACAAGAGCAGAGTACTGATAATCGGAGCAACAGGAAATCTGGGTCACCATTTAGTCAATGCCAGCCTCCATCTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACTCCTTCTCCGACCCCCACAAGTCCCAAAACCTTCAAGACCTCTCCGACGCCGGCGTCACGCTCCTCCAAGGTTCGCTGGAAGACGAAGACAGCCTTGTTAAAGCAGTGAAGCAAGTAGATGTTGTGATTTGTTCTGTTCAAGCCAAACTGGTGCTCCATCAGAAGCTTCTTATCCAGGTCATCAAAAATGCTGGTTCCATCAAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACACAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTGAGGGCATTCCCTACACTTTTGTTTCCTGCAATTTCTATACGAGCTATTTGCTACCTTCGCTTGTGCAGCCGGGCCTCAAAGTTCCTCCAAGGGACAAAGTCACAATTTTCGGGGATGGCAATACTAAAGGTGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACAAACTTTGAACAAAGTGTTGTATATGAGGCCACCTGGAAATGTGTACTCGCTAAATGAACTTGTTGAGCTTTGGGAGAGTAAGATTGGGAAGAAGCTTGAGAAGGTGTTTGTATCAGAGGAAGAGCTTCTTCAGAAGATTAAAGAGACTGCATATCCTGACAACATGGCCCTGATTTTCATATATTCGGCTTTCATAAAGGGCGATCAAACCTACTTTGATATCGAGTTAGCTAGTGGTGCGGATGCCACAAAACTTTATCCAGAACTGAATTATACGACGATCAGTCAATATATAGACACCCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

34.42

Weight (kDa)

5.45

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 304	1.1e-82	NmrA-like family
NAD_binding_10	PF13460	11 - 205	2.6e-16	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	1 cut(s)	605
AcsI	RAATTY	2 cut(s)	335, 363
AcuI	CTGAAG	1 cut(s)	731
AcyI	GRCGYC	3 cut(s)	162, 168, 412
AfaI	GTAC	2 cut(s)	21, 662
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	149, 254, 393, 625
AhdI	GACNNNNNGTC	1 cut(s)	900
AjnI	CCWGG	2 cut(s)	288, 649
AluBI	AGCT	8 cut(s)	280, 425, 471, 584, 685, 712, 742, 848
AluI	AGCT	8 cut(s)	280, 425, 471, 584, 685, 712, 742, 848
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	1 cut(s)	605
AoxI	GGCC	3 cut(s)	499, 644, 783
ApeKI	GCWGC	2 cut(s)	493, 584
ApoI	RAATTY	2 cut(s)	335, 363
Asp700I	GAANNNNTTC	1 cut(s)	741
AspS9I	GGNCC	3 cut(s)	346, 499, 784
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	44, 77
AvaII	GGWCC	1 cut(s)	346
BbsI	GAAGAC	2 cut(s)	201, 207
Bbv12I	GWGCWC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	505, 571
BccI	CCATC	6 cut(s)	84, 279, 320, 337, 367, 536
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	2 cut(s)	290, 651
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	1 cut(s)	849
BisI	GCNGC	2 cut(s)	494, 585
BlsI	GCNGC	2 cut(s)	495, 586
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	3 cut(s)	290, 498, 651
Bme18I	GGWCC	1 cut(s)	346
BmeRI	GACNNNNNGTC	1 cut(s)	900
BmgT120I	GGNCC	3 cut(s)	346, 499, 784
BmiI	GGNNCC	2 cut(s)	310, 348
BmrFI	CCNGG	3 cut(s)	290, 498, 651
BmsI	GCATC	1 cut(s)	850
BpiI	GAAGAC	2 cut(s)	201, 207
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	498
BsaHI	GRCGYC	3 cut(s)	162, 168, 412
BsaJI	CCNNGG	2 cut(s)	181, 515
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	290, 651
BseDI	CCNNGG	2 cut(s)	181, 515
BseGI	GGATG	3 cut(s)	378, 547, 865
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	505, 571
BsgI	GTGCAG	1 cut(s)	512
BshFI	GGCC	3 cut(s)	501, 646, 785
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	165, 497
BslFI	GGGAC	2 cut(s)	121, 533
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	121, 533
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	501, 646, 785
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	610, 820, 897
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	3 cut(s)	501, 646, 785
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	310, 348
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	181, 515
BssMI	GATC	3 cut(s)	610, 820, 897
BssNI	GRCGYC	3 cut(s)	162, 168, 412
BssT1I	CCWWGG	2 cut(s)	181, 515
Bst2UI	CCWGG	2 cut(s)	290, 651
Bst6I	CTCTTC	1 cut(s)	732
BstACI	GRCGYC	3 cut(s)	162, 168, 412
BstC8I	GCNNGC	2 cut(s)	70, 166
BstDEI	CTNAG	1 cut(s)	426
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	378, 547, 865
BstKTI	GATC	3 cut(s)	613, 823, 900
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	3 cut(s)	610, 820, 897
BstMWI	GCNNNNNNNGC	3 cut(s)	484, 493, 854
BstNI	CCWGG	2 cut(s)	290, 651
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	288, 496, 649
BstV1I	GCAGC	2 cut(s)	505, 571
BstV2I	GAAGAC	2 cut(s)	201, 207
BsuRI	GGCC	3 cut(s)	501, 646, 785
BtsCI	GGATG	3 cut(s)	378, 547, 865
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	70, 166
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	346, 499, 784
CseI	GACGC	3 cut(s)	157, 170, 401
Csp6I	GTAC	2 cut(s)	20, 661
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviAII	CATG	1 cut(s)	781
CviQI	GTAC	2 cut(s)	20, 661
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	612, 822, 899
DpnII	GATC	3 cut(s)	610, 820, 897
DrdI	GACNNNNNNGTC	1 cut(s)	167
DriI	GACNNNNNGTC	1 cut(s)	900
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	732
Eam1105I	GACNNNNNGTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	732
Eco130I	CCWWGG	2 cut(s)	181, 515
Eco32I	GATATC	1 cut(s)	838
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	731
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	288, 649
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	2 cut(s)	181, 515
ErhI	CCWWGG	2 cut(s)	181, 515
FaeI	CATG	1 cut(s)	784
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 729, 761
FaqI	GGGAC	2 cut(s)	121, 533
FatI	CATG	1 cut(s)	780
Fnu4HI	GCNGC	2 cut(s)	494, 585
FokI	GGATG	3 cut(s)	385, 554, 872
Fsp4HI	GCNGC	2 cut(s)	494, 585
FspBI	CTAG	1 cut(s)	849
GluI	GCNGC	2 cut(s)	494, 585
HaeIII	GGCC	3 cut(s)	501, 646, 785
HapII	CCGG	2 cut(s)	165, 497
HgaI	GACGC	3 cut(s)	157, 170, 401
Hin1I	GRCGYC	3 cut(s)	162, 168, 412
Hin1II	CATG	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	278, 710
HinfI	GANTC	2 cut(s)	113, 321
HpaII	CCGG	2 cut(s)	165, 497
HphI	GGTGA	2 cut(s)	44, 77
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	8 cut(s)	32, 107, 124, 160, 276, 334, 733, 750
Hpy188III	TCNNGA	5 cut(s)	149, 316, 598, 773, 878
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	2 cut(s)	164, 898
HpyAV	CCTTC	5 cut(s)	127, 155, 492, 598, 712
HpyCH4V	TGCA	3 cut(s)	456, 493, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	484, 493, 854
HpyF3I	CTNAG	1 cut(s)	426
Hsp92I	GRCGYC	3 cut(s)	162, 168, 412
Hsp92II	CATG	1 cut(s)	784
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	610, 820, 897
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	3 cut(s)	32, 180, 273
Lsp1109I	GCAGC	2 cut(s)	505, 571
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	1 cut(s)	849
MaeIII	GTNAC	3 cut(s)	50, 169, 526
MalI	GATC	3 cut(s)	612, 822, 899
MboI	GATC	3 cut(s)	610, 820, 897
MboII	GAAGA	6 cut(s)	206, 212, 718, 737, 749, 763
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	6 cut(s)	335, 363, 457, 531, 573, 886
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	4 cut(s)	130, 147, 183, 324
MnlI	CCTC	8 cut(s)	83, 164, 188, 421, 512, 522, 636, 727
MreI	CGCCGGCG	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	2 cut(s)	213, 756
MspI	CCGG	2 cut(s)	165, 497
MspR9I	CCNGG	3 cut(s)	290, 498, 651
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	290, 651
MwoI	GCNNNNNNNGC	3 cut(s)	484, 493, 854
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	610, 820, 897
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	784
NlaIV	GGNNCC	2 cut(s)	310, 348
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	3 cut(s)	50, 169, 526
PciSI	GCTCTTC	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	495, 586
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	288, 649
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	288, 649
PspN4I	GGNNCC	2 cut(s)	310, 348
PspPI	GGNCC	3 cut(s)	346, 499, 784
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	2 cut(s)	21, 662
RsaNI	GTAC	2 cut(s)	20, 661
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	213, 756
SatI	GCNGC	2 cut(s)	494, 585
Sau3AI	GATC	3 cut(s)	610, 820, 897
Sau96I	GGNCC	3 cut(s)	346, 499, 784
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	290, 498, 651
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	850
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	6 cut(s)	335, 363, 457, 531, 573, 886
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	1 cut(s)	849
StyD4I	CCNGG	3 cut(s)	288, 496, 649
StyI	CCWWGG	2 cut(s)	181, 515
TaqI	TCGA	1 cut(s)	840
TasI	AATT	6 cut(s)	335, 363, 457, 531, 573, 886
TatI	WGTACW	2 cut(s)	19, 660
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	213, 756
Tru9I	TTAA	2 cut(s)	213, 756
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	3 cut(s)	50, 169, 526
TseI	GCWGC	2 cut(s)	493, 584
Tsp45I	GTSAC	3 cut(s)	50, 169, 526
TspDTI	ATGAA	4 cut(s)	313, 687, 784, 799
TspRI	CASTG	1 cut(s)	225
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	335, 363
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	1 cut(s)	849
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.