Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

1838391 .. 1842187

Gene Structure 3797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGTGCGTCCAGGTTCATAAAGTGTGTCACTGTTGGGGATGGAGCGGTGGGCAAGACTTGTATGCTCATCTCTTACACCAGCAACACTTTCCCAACGGATTATGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGGAGCACAGTGAACTTGGGGTTGTGGGATACTGCTGGGCAGGAGGATTACAATAGACTCAGACCATTGAGCTACCGTGGGGCAGATGTGTTCTTACTTGCATTCTCTCTAATCAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAAGCATTATGCACCTGGTGTTCCAATTATTCTTGTTGGAACAAAGCTTGATCTTCGCGATGACAAGCAGTTCTTAGCTGATCACCCTGGTGCAGTGCCAATTACCACAGCGCAGGGAGAGGAACTAAAAAAGCTGATTGGAGCTCCGATTTACATAGAATGTAGCTCGAAAACACAGCAGAATGTGAAAGCAGTCTTTGATGCCGCCATTAAAGTGGTTCTGCAGCCGCCAAAGCAGAAGAAGAAAAAGAAGAGAAAGGCAAATAATGCCTGCTCCATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

198

Amino Acids

21.68

Weight (kDa)

9.28

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	2.2e-49	Ras family
Roc	PF08477	8 - 121	1.8e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	47, 516, 539
AdeI	CACNNNGTG	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	3 cut(s)	11, 325, 397
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	7 cut(s)	222, 276, 358, 389, 445, 455, 477
AluI	AGCT	7 cut(s)	222, 276, 358, 389, 445, 455, 477
Alw21I	GWGCWC	2 cut(s)	158, 457
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	457
Bbv12I	GWGCWC	2 cut(s)	158, 457
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	2 cut(s)	35, 143
BciT130I	CCWGG	3 cut(s)	13, 327, 399
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	391
BfmI	CTRYAG	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	3 cut(s)	516, 536, 539
BlsI	GCNGC	3 cut(s)	517, 537, 540
Bme1390I	CCNGG	3 cut(s)	13, 327, 399
BmrFI	CCNGG	3 cut(s)	13, 327, 399
BmsI	GCATC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	226, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	13, 327, 399
BseDI	CCNNGG	2 cut(s)	226, 397
BseGI	GGATG	2 cut(s)	46, 154
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	547
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	158, 457
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	158, 457
Bsp143I	GATC	2 cut(s)	361, 391
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	3 cut(s)	47, 516, 539
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	537
BsrBI	CCGCTC	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	226, 397
BssMI	GATC	2 cut(s)	361, 391
Bst2UI	CCWGG	3 cut(s)	13, 327, 399
Bst4CI	ACNGT	4 cut(s)	34, 115, 160, 227
Bst6I	CTCTTC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	274, 583
BstDEI	CTNAG	2 cut(s)	209, 385
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	46, 154
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	364, 394
BstMBI	GATC	2 cut(s)	361, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 544, 578
BstNI	CCWGG	3 cut(s)	13, 327, 399
BstSCI	CCNGG	3 cut(s)	11, 325, 397
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	46, 154
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	4 cut(s)	30, 136, 165, 411
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	274, 583
CfoI	GCGC	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	325
CviJI	RGCY	9 cut(s)	222, 272, 276, 358, 389, 445, 455, 477, 538
CviKI_1	RGCY	9 cut(s)	222, 272, 276, 358, 389, 445, 455, 477, 538
DdeI	CTNAG	2 cut(s)	209, 385
DpnI	GATC	2 cut(s)	363, 393
DpnII	GATC	2 cut(s)	361, 391
DraIII	CACNNNGTG	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoRII	CCWGG	3 cut(s)	11, 325, 397
EcoT38I	GRGCYC	1 cut(s)	457
FaiI	YATR	7 cut(s)	20, 65, 105, 279, 321, 467, 590
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	516, 536, 539
FokI	GGATG	2 cut(s)	53, 161
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	516, 536, 539
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	516, 536, 539
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	2 cut(s)	207, 301
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	212, 459
Hpy188III	TCNNGA	2 cut(s)	305, 368
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4III	ACNGT	4 cut(s)	34, 115, 160, 227
HpyCH4V	TGCA	5 cut(s)	134, 251, 323, 404, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 544, 578
HpyF3I	CTNAG	2 cut(s)	209, 385
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	361, 391
LmnI	GCTCC	5 cut(s)	44, 153, 452, 460, 590
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	502
MabI	ACCWGGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	363, 393
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	2 cut(s)	361, 391
MboII	GAAGA	4 cut(s)	356, 562, 565, 574
MhlI	GDGCHC	2 cut(s)	158, 457
MluCI	AATT	4 cut(s)	124, 308, 336, 411
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	187, 424
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	2 cut(s)	399, 524
MspR9I	CCNGG	3 cut(s)	13, 327, 399
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	3 cut(s)	13, 327, 399
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	273, 544, 578
NdeII	GATC	2 cut(s)	361, 391
NmuCI	GTSAC	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	369
OliI	CACNNNNGTG	1 cut(s)	399
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	517, 537, 540
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	3 cut(s)	11, 325, 397
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	3 cut(s)	11, 325, 397
PstI	CTGCAG	1 cut(s)	537
RruI	TCGCGA	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	399, 524
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	516, 536, 539
Sau3AI	GATC	2 cut(s)	361, 391
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	3 cut(s)	13, 327, 399
SduI	GDGCHC	2 cut(s)	158, 457
SetI	ASST	9 cut(s)	17, 224, 278, 328, 360, 391, 447, 457, 479
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	2 cut(s)	399, 524
Sse9I	AATT	4 cut(s)	124, 308, 336, 411
SsiI	CCGC	3 cut(s)	47, 516, 539
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	11, 325, 397
TaaI	ACNGT	4 cut(s)	34, 115, 160, 227
TaqI	TCGA	1 cut(s)	479
TasI	AATT	4 cut(s)	124, 308, 336, 411
TauI	GCSGC	2 cut(s)	518, 541
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	4 cut(s)	37, 136, 165, 411
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	7, 294
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	4 cut(s)	37, 136, 165, 411
Van91I	CCANNNNNTGG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.