Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

14980477 .. 14981994

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGAAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTTTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCAATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGTTGTTCAGGTCAAACAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCAGGGACGGAAATACTAAAGGCGTTTTTTTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTAGGCCACCCGGAAATGTGTACTCGCTGAATGAACTTGTTGAGCTTTGGGAGAGTAAGATTGGGAAGAAGCTTGAGAAGGTGTTTGTATCAAAAGAAGAGCTTCTTAAGAAGATTAAAGCAAATCAAATAAGTGAAATAACATATCTGAATTTAAAGGCCCAGAGTTCATATCATCATCAGTTCATCACTTCATCACACATAAAAAACAATCAAATAACAAATCAGTTCAACACTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

277

Amino Acids

31.49

Weight (kDa)

9.39

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 247	1.3e-54	NmrA-like family
NAD_binding_10	PF13460	14 - 88	5.5e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	287, 315, 742
AcyI	GRCGYC	2 cut(s)	174, 364
AfaI	GTAC	2 cut(s)	27, 614
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	4 cut(s)	345, 520, 577, 823
AluBI	AGCT	6 cut(s)	377, 423, 536, 637, 664, 694
AluI	AGCT	6 cut(s)	377, 423, 536, 637, 664, 694
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	3 cut(s)	451, 596, 750
ApeKI	GCWGC	2 cut(s)	445, 536
ApoI	RAATTY	3 cut(s)	287, 315, 742
Asp700I	GAANNNNTTC	1 cut(s)	693
AspS9I	GGNCC	3 cut(s)	298, 451, 751
AsuC2I	CCSGG	2 cut(s)	450, 603
AsuHPI	GGTGA	2 cut(s)	50, 83
AvaII	GGWCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	457, 523
BccI	CCATC	2 cut(s)	289, 319
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BcnI	CCSGG	2 cut(s)	450, 603
BfrI	CTTAAG	1 cut(s)	698
BisI	GCNGC	2 cut(s)	446, 537
BlsI	GCNGC	2 cut(s)	447, 538
BmcAI	AGTACT	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	450, 603
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	298, 451, 751
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	450, 603
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	363, 686
BpuMI	CCSGG	2 cut(s)	450, 603
BsaHI	GRCGYC	2 cut(s)	174, 364
BsaJI	CCNNGG	2 cut(s)	187, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	187, 467
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	457, 523
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	453, 598, 752
BsiSI	CCGG	3 cut(s)	171, 449, 603
BslFI	GGGAC	3 cut(s)	127, 485, 506
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	127, 485, 506
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	453, 598, 752
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	562
BspANI	GGCC	3 cut(s)	453, 598, 752
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	684
BspTI	CTTAAG	1 cut(s)	698
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	187, 467
BssMI	GATC	1 cut(s)	562
BssNI	GRCGYC	2 cut(s)	174, 364
BssT1I	CCWWGG	2 cut(s)	187, 467
Bst6I	CTCTTC	3 cut(s)	11, 201, 684
BstACI	GRCGYC	2 cut(s)	174, 364
BstAFI	CTTAAG	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	76, 172
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	565
BstMBI	GATC	1 cut(s)	562
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	448, 601
BstV1I	GCAGC	2 cut(s)	457, 523
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	453, 598, 752
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	76, 172
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	298, 451, 751
CseI	GACGC	3 cut(s)	163, 319, 353
Csp6I	GTAC	2 cut(s)	26, 613
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviQI	GTAC	2 cut(s)	26, 613
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
DraI	TTTAAA	1 cut(s)	747
Eam1104I	CTCTTC	3 cut(s)	11, 201, 684
EarI	CTCTTC	3 cut(s)	11, 201, 684
Eco130I	CCWWGG	2 cut(s)	187, 467
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	187, 467
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	187, 467
FaiI	YATR	5 cut(s)	417, 736, 763, 794, 832
FalI	AAGNNNNNCTT	6 cut(s)	198, 230, 678, 710, 681, 713
FaqI	GGGAC	3 cut(s)	127, 485, 506
Fnu4HI	GCNGC	2 cut(s)	446, 537
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	446, 537
GluI	GCNGC	2 cut(s)	446, 537
HaeIII	GGCC	3 cut(s)	453, 598, 752
HapII	CCGG	3 cut(s)	171, 449, 603
HgaI	GACGC	3 cut(s)	163, 319, 353
Hin1I	GRCGYC	2 cut(s)	174, 364
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	3 cut(s)	171, 449, 603
HphI	GGTGA	2 cut(s)	50, 83
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	5 cut(s)	38, 113, 130, 286, 741
Hpy188III	TCNNGA	2 cut(s)	481, 550
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	5 cut(s)	133, 161, 444, 550, 664
HpyCH4V	TGCA	2 cut(s)	408, 445
Hsp92I	GRCGYC	2 cut(s)	174, 364
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	562
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	457, 523
MaeIII	GTNAC	3 cut(s)	56, 175, 478
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	9 cut(s)	19, 22, 25, 28, 212, 218, 670, 701, 715
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	5 cut(s)	287, 315, 409, 525, 742
MmeI	TCCRAC	4 cut(s)	136, 153, 199, 276
MnlI	CCTC	5 cut(s)	89, 170, 194, 464, 474
MroNI	GCCGGC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	3 cut(s)	699, 708, 746
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	3 cut(s)	171, 449, 603
MspR9I	CCNGG	2 cut(s)	450, 603
Mva1269I	GAATGC	1 cut(s)	384
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	2 cut(s)	450, 603
NdeII	GATC	1 cut(s)	562
NgoMIV	GCCGGC	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	3 cut(s)	56, 175, 478
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	447, 538
PspEI	GGTNACC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	3 cut(s)	298, 451, 751
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	2 cut(s)	27, 614
RsaNI	GTAC	2 cut(s)	26, 613
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	699, 708, 746
SatI	GCNGC	2 cut(s)	446, 537
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	3 cut(s)	298, 451, 751
ScaI	AGTACT	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	450, 603
SduI	GDGCHC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	3 cut(s)	378, 665, 698
SmoI	CTYRAG	3 cut(s)	378, 665, 698
Sse9I	AATT	5 cut(s)	287, 315, 409, 525, 742
StyD4I	CCNGG	2 cut(s)	448, 601
StyI	CCWWGG	2 cut(s)	187, 467
TaqI	TCGA	1 cut(s)	154
TasI	AATT	5 cut(s)	287, 315, 409, 525, 742
TatI	WGTACW	2 cut(s)	25, 612
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	699, 708, 746
Tru9I	TTAA	3 cut(s)	699, 708, 746
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	3 cut(s)	56, 175, 478
TseI	GCWGC	2 cut(s)	445, 536
Tsp45I	GTSAC	3 cut(s)	56, 175, 478
TspDTI	ATGAA	6 cut(s)	265, 639, 750, 766, 774, 819
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	231
Tth111I	GACNNNGTC	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	3 cut(s)	287, 315, 742
XmnI	GAANNNNTTC	1 cut(s)	693
ZrmI	AGTACT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.