Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

31413050 .. 31416128

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTAGGTACTTCTTCTATCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGGTATTGCAAGTTTGTTTGTGTTTATTTGTACAGTTTCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

275

Amino Acids

30.92

Weight (kDa)

7.68

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 86	2.8e-18	NmrA-like family
NAD_binding_10	PF13460	13 - 88	7.4e-07	NAD(P)H-binding
NmrA	PF05368	89 - 195	6.2e-22	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	284, 312
AcvI	CACGTG	1 cut(s)	680
AcyI	GRCGYC	2 cut(s)	171, 361
AfaI	GTAC	3 cut(s)	24, 596, 813
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	342, 574, 704
AluBI	AGCT	3 cut(s)	374, 420, 533
AluI	AGCT	3 cut(s)	374, 420, 533
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	4 cut(s)	442, 533, 647, 683
ApoI	RAATTY	2 cut(s)	284, 312
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	2 cut(s)	295, 448
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	47, 80
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	1 cut(s)	804
BbrPI	CACGTG	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	454, 520, 634, 670
BccI	CCATC	3 cut(s)	286, 316, 724
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	447
BisI	GCNGC	4 cut(s)	443, 534, 648, 684
BlsI	GCNGC	4 cut(s)	444, 535, 649, 685
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	295, 448
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	154, 638
BpiI	GAAGAC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	680
BsaHI	GRCGYC	2 cut(s)	171, 361
BsaJI	CCNNGG	2 cut(s)	184, 464
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 768, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	184, 464
BseGI	GGATG	2 cut(s)	327, 735
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	170, 789
BseXI	GCAGC	4 cut(s)	454, 520, 634, 670
BsgI	GTGCAG	2 cut(s)	461, 633
BshFI	GGCC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	168, 446
BslFI	GGGAC	3 cut(s)	124, 482, 503
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	3 cut(s)	124, 482, 503
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	811
Bsp143I	GATC	2 cut(s)	559, 670
BspANI	GGCC	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	184, 464
BssMI	GATC	2 cut(s)	559, 670
BssNI	GRCGYC	2 cut(s)	171, 361
BssT1I	CCWWGG	2 cut(s)	184, 464
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	2 cut(s)	8, 198
BstACI	GRCGYC	2 cut(s)	171, 361
BstAUI	TGTACA	1 cut(s)	811
BstBAI	YACGTR	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	73, 169
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	327, 735
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	2 cut(s)	562, 673
BstMBI	GATC	2 cut(s)	559, 670
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	454, 520, 634, 670
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	327, 735
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	73, 169
CfoI	GCGC	1 cut(s)	720
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	295, 448
CseI	GACGC	3 cut(s)	160, 316, 350
Csp6I	GTAC	3 cut(s)	23, 595, 812
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviQI	GTAC	3 cut(s)	23, 595, 812
DpnI	GATC	2 cut(s)	561, 672
DpnII	GATC	2 cut(s)	559, 670
Eam1104I	CTCTTC	2 cut(s)	8, 198
EarI	CTCTTC	2 cut(s)	8, 198
Eco130I	CCWWGG	2 cut(s)	184, 464
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	295
Eco72I	CACGTG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	184, 464
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	184, 464
FaiI	YATR	2 cut(s)	414, 669
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	3 cut(s)	124, 482, 503
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	4 cut(s)	443, 534, 648, 684
FokI	GGATG	2 cut(s)	334, 742
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	4 cut(s)	443, 534, 648, 684
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	4 cut(s)	443, 534, 648, 684
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	2 cut(s)	168, 446
HgaI	GACGC	3 cut(s)	160, 316, 350
HhaI	GCGC	1 cut(s)	720
Hin1I	GRCGYC	2 cut(s)	171, 361
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	2 cut(s)	168, 446
HphI	GGTGA	2 cut(s)	47, 80
Hpy188I	TCNGA	7 cut(s)	35, 110, 127, 163, 283, 609, 675
Hpy188III	TCNNGA	3 cut(s)	478, 547, 755
HpyAV	CCTTC	5 cut(s)	130, 158, 441, 547, 604
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	5 cut(s)	405, 442, 619, 650, 790
HpySE526I	ACGT	1 cut(s)	679
Hsp92I	GRCGYC	2 cut(s)	171, 361
HspAI	GCGC	1 cut(s)	718
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	559, 670
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	4 cut(s)	454, 520, 634, 670
LweI	GCATC	2 cut(s)	154, 638
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	3 cut(s)	53, 172, 475
MalI	GATC	2 cut(s)	561, 672
MboI	GATC	2 cut(s)	559, 670
MboII	GAAGA	7 cut(s)	19, 22, 25, 209, 215, 592, 812
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	6 cut(s)	284, 312, 406, 522, 721, 741
MmeI	TCCRAC	4 cut(s)	133, 150, 196, 273
MnlI	CCTC	8 cut(s)	86, 167, 191, 461, 471, 697, 720, 767
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	2 cut(s)	623, 750
MspI	CCGG	2 cut(s)	168, 446
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	381
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	2 cut(s)	559, 670
NgoMIV	GCCGGC	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	3 cut(s)	53, 172, 475
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	444, 535, 649, 685
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
Ppu21I	YACGTR	1 cut(s)	680
PspCI	CACGTG	1 cut(s)	680
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	295, 448
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	3 cut(s)	24, 596, 813
RsaNI	GTAC	3 cut(s)	23, 595, 812
SaqAI	TTAA	2 cut(s)	623, 750
SatI	GCNGC	4 cut(s)	443, 534, 648, 684
Sau3AI	GATC	2 cut(s)	559, 670
Sau96I	GGNCC	2 cut(s)	295, 448
ScaI	AGTACT	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	154, 638
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	6 cut(s)	284, 312, 406, 522, 721, 741
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	2 cut(s)	184, 464
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	2 cut(s)	151, 768
TasI	AATT	6 cut(s)	284, 312, 406, 522, 721, 741
TatI	WGTACW	2 cut(s)	22, 811
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	623, 750
Tru9I	TTAA	2 cut(s)	623, 750
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	53, 172, 475
TseI	GCWGC	4 cut(s)	442, 533, 647, 683
Tsp45I	GTSAC	3 cut(s)	53, 172, 475
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	284, 312
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.