Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Forward (+)

15820749 .. 15822974

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACTCCAGATTTTGCCGACCCATTGTGGCTCACATCTTCTGATTTTGGACCTAAATTTAGGTTTTGGACCAAATTTGGGTTCCCCACTGCTGATGCTCTAAAACTGTTCTTTAGCCGCGTACTAGATTTTGTTTCGGATCTGGTTCTAATCCGTAGAGTGCAAGATTTTGGGTTCAAAGGTCGGGTGAAACCAGAAATGGAGAAGAAGAAGAGCAGAGTACTGATAATCGGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCGCAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGATGAAGAGAGCCTTGTTGAAGCAGTGAAGCAAGTTGATGTTGTTGTTTGTGCTGTTCAGGCCAAACAGGTGCTCCATCAGAAGCTTCTTATCCAAGTTATCAAAAATGCTGGCTCCATCAAGAGATTCGTTCCATCAGAATTTGGGTTGGACCCAGATAAGACGCAGATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCTGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTGTTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGGCAAAGTCACGATTTTCGGGGACGGAAATACTGAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTAGGCCACCCGGAAATGTGTACTCGCTGAATGAACTTGTTGAGCTTTGGGAGAGTAAGATTGGGAAGAAGCTTGAGAAGGTGTTTGTATCAGAAGAAGAGCTTCTTAAGAAGATTAAAGAGACTTCATATCCTGACAACATGCCCCTGATTTTCATATATTCTGCTTTCATAAAGGGCGATCAAACTTACTTTGATATCGAGTCAGCTGATAGTGCCGATGCGACAAAACTGTATCCAGAGCTAAATTATACTACAATCAGTCAATATTTAGACACTATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

375

Amino Acids

42.32

Weight (kDa)

6.56

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	70 - 371	2.1e-79	NmrA-like family
NAD_binding_10	PF13460	78 - 272	8e-16	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	118, 331
AclWI	GGATC	2 cut(s)	147, 806
AcsI	RAATTY	3 cut(s)	56, 74, 536
AcuI	CTGAAG	1 cut(s)	774
AcyI	GRCGYC	2 cut(s)	369, 613
AfaI	GTAC	3 cut(s)	123, 222, 863
AfiI	CCNNNNNNNGG	2 cut(s)	78, 719
AflII	CTTAAG	1 cut(s)	947
AgsI	TTSAA	4 cut(s)	178, 416, 594, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	956
AlwI	GGATC	2 cut(s)	147, 806
AoxI	GGCC	3 cut(s)	456, 700, 845
ApeKI	GCWGC	2 cut(s)	694, 785
ApoI	RAATTY	3 cut(s)	56, 74, 536
Asp700I	GAANNNNTTC	1 cut(s)	942
AspS9I	GGNCC	4 cut(s)	50, 69, 547, 700
AsuC2I	CCSGG	2 cut(s)	699, 852
AsuHPI	GGTGA	3 cut(s)	199, 245, 278
AvaII	GGWCC	3 cut(s)	50, 69, 547
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	706, 772
BccI	CCATC	4 cut(s)	480, 521, 538, 568
BcgI	CGANNNNNNTGC	2 cut(s)	658, 692
BciVI	GTATCC	1 cut(s)	1086
BcnI	CCSGG	2 cut(s)	699, 852
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	947
BfuI	GTATCC	1 cut(s)	1086
BisI	GCNGC	3 cut(s)	118, 695, 786
BlsI	GCNGC	3 cut(s)	119, 696, 787
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	699, 852
Bme18I	GGWCC	3 cut(s)	50, 69, 547
BmgT120I	GGNCC	4 cut(s)	50, 69, 547, 700
BmiI	GGNNCC	3 cut(s)	83, 511, 549
BmrFI	CCNGG	2 cut(s)	699, 852
BmsI	GCATC	3 cut(s)	85, 352, 1051
BpuEI	CTTGAG	2 cut(s)	612, 935
BpuMI	CCSGG	2 cut(s)	699, 852
BsaHI	GRCGYC	2 cut(s)	369, 613
BsaJI	CCNNGG	2 cut(s)	382, 716
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 719
Bse118I	RCCGGY	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	382, 716
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	78, 719
BseMII	CTCAG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	706, 772
BsgI	GTGCAG	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	458, 702, 847
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	366, 698, 852
BslFI	GGGAC	2 cut(s)	322, 755
BslI	CCNNNNNNNGG	2 cut(s)	78, 719
BsmAI	GTCTC	1 cut(s)	956
BsmFI	GGGAC	2 cut(s)	322, 755
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	458, 702, 847
Bsp1286I	GDGCHC	2 cut(s)	355, 471
Bsp143I	GATC	3 cut(s)	139, 811, 1021
BspACI	CCGC	2 cut(s)	118, 331
BspANI	GGCC	3 cut(s)	458, 702, 847
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	83, 511, 549
BspPI	GGATC	2 cut(s)	147, 806
BspQI	GCTCTTC	2 cut(s)	206, 933
BspTI	CTTAAG	1 cut(s)	947
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	382, 716
BssMI	GATC	3 cut(s)	139, 811, 1021
BssNI	GRCGYC	2 cut(s)	369, 613
BssT1I	CCWWGG	2 cut(s)	382, 716
Bst4CI	ACNGT	2 cut(s)	108, 1074
Bst6I	CTCTTC	3 cut(s)	206, 396, 933
BstACI	GRCGYC	2 cut(s)	369, 613
BstAFI	CTTAAG	1 cut(s)	947
BstC8I	GCNNGC	3 cut(s)	271, 367, 508
BstDEI	CTNAG	1 cut(s)	603
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	142, 814, 1024
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	3 cut(s)	139, 811, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 1055
BstNSI	RCATGY	1 cut(s)	985
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	697, 850
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	706, 772
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	1086
BsuRI	GGCC	3 cut(s)	458, 702, 847
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	2 cut(s)	87, 426
BtsIMutI	CAGTG	2 cut(s)	87, 426
Cac8I	GCNNGC	3 cut(s)	271, 367, 508
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	4 cut(s)	50, 69, 547, 700
CseI	GACGC	3 cut(s)	358, 568, 602
Csp6I	GTAC	3 cut(s)	122, 221, 862
CspCI	CAANNNNNGTGG	2 cut(s)	804, 839
CviAII	CATG	1 cut(s)	982
CviQI	GTAC	3 cut(s)	122, 221, 862
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	3 cut(s)	141, 813, 1023
DpnII	GATC	3 cut(s)	139, 811, 1021
Eam1104I	CTCTTC	3 cut(s)	206, 396, 933
EarI	CTCTTC	3 cut(s)	206, 396, 933
Eco130I	CCWWGG	2 cut(s)	382, 716
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	1039
Eco47I	GGWCC	3 cut(s)	50, 69, 547
Eco57I	CTGAAG	1 cut(s)	774
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRV	GATATC	1 cut(s)	1039
EcoT14I	CCWWGG	2 cut(s)	382, 716
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	382, 716
FaeI	CATG	1 cut(s)	985
FaiI	YATR	8 cut(s)	666, 970, 983, 998, 1000, 1013, 1092, 1121
FalI	AAGNNNNNCTT	6 cut(s)	393, 425, 927, 959, 930, 962
FaqI	GGGAC	2 cut(s)	322, 755
FatI	CATG	1 cut(s)	981
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	3 cut(s)	118, 695, 786
FokI	GGATG	1 cut(s)	586
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	3 cut(s)	118, 695, 786
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	3 cut(s)	118, 695, 786
HaeIII	GGCC	3 cut(s)	458, 702, 847
HapII	CCGG	3 cut(s)	366, 698, 852
HgaI	GACGC	3 cut(s)	358, 568, 602
Hin1I	GRCGYC	2 cut(s)	369, 613
Hin1II	CATG	1 cut(s)	985
HindIII	AAGCTT	2 cut(s)	479, 911
HinfI	GANTC	3 cut(s)	4, 522, 1043
HpaII	CCGG	3 cut(s)	366, 698, 852
HphI	GGTGA	3 cut(s)	199, 245, 278
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	9 cut(s)	43, 139, 233, 308, 325, 361, 477, 535, 934
Hpy188III	TCNNGA	6 cut(s)	8, 517, 730, 799, 974, 1079
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	6 cut(s)	328, 356, 693, 749, 799, 913
HpyCH4III	ACNGT	2 cut(s)	108, 1074
HpyCH4V	TGCA	3 cut(s)	163, 657, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 1055
HpyF3I	CTNAG	1 cut(s)	603
Hsp92I	GRCGYC	2 cut(s)	369, 613
Hsp92II	CATG	1 cut(s)	985
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	139, 811, 1021
LguI	GCTCTTC	2 cut(s)	206, 933
LmnI	GCTCC	3 cut(s)	233, 474, 515
Lsp1109I	GCAGC	2 cut(s)	706, 772
LweI	GCATC	3 cut(s)	85, 352, 1051
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	3 cut(s)	251, 370, 727
MalI	GATC	3 cut(s)	141, 813, 1023
MboI	GATC	3 cut(s)	139, 811, 1021
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	355, 471
MluCI	AATT	6 cut(s)	56, 74, 536, 658, 774, 1087
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	3 cut(s)	331, 348, 525
MnlI	CCTC	5 cut(s)	284, 365, 389, 713, 723
MroNI	GCCGGC	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	942
MseI	TTAA	2 cut(s)	948, 957
MspA1I	CMGCKG	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	3 cut(s)	366, 698, 852
MspR9I	CCNGG	2 cut(s)	699, 852
Mva1269I	GAATGC	1 cut(s)	633
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	455, 1055
NaeI	GCCGGC	1 cut(s)	367
NciI	CCSGG	2 cut(s)	699, 852
NdeII	GATC	3 cut(s)	139, 811, 1021
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	985
NlaIV	GGNNCC	3 cut(s)	83, 511, 549
NmuCI	GTSAC	3 cut(s)	251, 370, 727
NspI	RCATGY	1 cut(s)	985
PciSI	GCTCTTC	2 cut(s)	206, 933
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	633
PdiI	GCCGGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	942
PfeI	GAWTC	1 cut(s)	522
PkrI	GCNGC	3 cut(s)	119, 696, 787
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	83, 511, 549
PspPI	GGNCC	4 cut(s)	50, 69, 547, 700
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	1049
RsaI	GTAC	3 cut(s)	123, 222, 863
RsaNI	GTAC	3 cut(s)	122, 221, 862
SapI	GCTCTTC	2 cut(s)	206, 933
SaqAI	TTAA	2 cut(s)	948, 957
SatI	GCNGC	3 cut(s)	118, 695, 786
Sau3AI	GATC	3 cut(s)	139, 811, 1021
Sau96I	GGNCC	4 cut(s)	50, 69, 547, 700
ScaI	AGTACT	1 cut(s)	222
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	2 cut(s)	699, 852
SduI	GDGCHC	2 cut(s)	355, 471
SfaNI	GCATC	3 cut(s)	85, 352, 1051
SinI	GGWCC	3 cut(s)	50, 69, 547
SmlI	CTYRAG	3 cut(s)	627, 914, 947
SmoI	CTYRAG	3 cut(s)	627, 914, 947
Sse9I	AATT	6 cut(s)	56, 74, 536, 658, 774, 1087
SsiI	CCGC	2 cut(s)	118, 331
SspI	AATATT	1 cut(s)	1109
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	697, 850
StyI	CCWWGG	2 cut(s)	382, 716
TaaI	ACNGT	2 cut(s)	108, 1074
TaqI	TCGA	2 cut(s)	349, 1041
TasI	AATT	6 cut(s)	56, 74, 536, 658, 774, 1087
TatI	WGTACW	2 cut(s)	220, 861
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	2 cut(s)	948, 957
Tru9I	TTAA	2 cut(s)	948, 957
TscAI	CASTG	2 cut(s)	94, 426
TseFI	GTSAC	3 cut(s)	251, 370, 727
TseI	GCWGC	2 cut(s)	694, 785
Tsp45I	GTSAC	3 cut(s)	251, 370, 727
TspDTI	ATGAA	5 cut(s)	414, 888, 957, 985, 1000
TspGWI	ACGGA	2 cut(s)	143, 759
TspRI	CASTG	2 cut(s)	94, 426
Vha464I	CTTAAG	1 cut(s)	947
VpaK11BI	GGWCC	3 cut(s)	50, 69, 547
XapI	RAATTY	3 cut(s)	56, 74, 536
XceI	RCATGY	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	942
XspI	CTAG	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.