Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

62949439 .. 62953652

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG445100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCAATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGATGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGTCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCAGAACTGGTAAATTCATCCCATTCACAAGGAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCTAACTGTTGACGTGGCAGAAATTATCAGGCTTTGGACACATGCTTTACAGCGTATTCATAAACAGTCACTTCATATGGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGGGATGTGGGATAGTGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

425

Amino Acids

47.47

Weight (kDa)

7.04

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 86	5e-18	NmrA-like family
NAD_binding_10	PF13460	13 - 88	8.7e-07	NAD(P)H-binding
NmrA	PF05368	89 - 197	1.3e-21	NmrA-like family
eIF3a_PCI_TPR-like	PF22591	191 - 310	1.3e-28	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1173
AccBSI	CCGCTC	1 cut(s)	591
AciI	CCGC	1 cut(s)	589
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	5 cut(s)	284, 312, 681, 982, 1158
AcuI	CTGAAG	1 cut(s)	728
AcvI	CACGTG	1 cut(s)	845
AcyI	GRCGYC	2 cut(s)	171, 361
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflII	CTTAAG	1 cut(s)	766
AflIII	ACRYGT	1 cut(s)	842
AgsI	TTSAA	7 cut(s)	342, 574, 599, 730, 869, 954, 1188
AjiI	CACGTC	1 cut(s)	1063
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	6 cut(s)	442, 533, 812, 848, 1211, 1234
ApoI	RAATTY	5 cut(s)	284, 312, 681, 982, 1158
Asp700I	GAANNNNTTC	2 cut(s)	603, 1014
AspLEI	GCGC	2 cut(s)	885, 1174
AspS9I	GGNCC	3 cut(s)	295, 448, 1151
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	47, 80
AsuNHI	GCTAGC	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	295, 1151
BanII	GRGCYC	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	845
BbvI	GCAGC	6 cut(s)	454, 520, 799, 835, 1198, 1246
BccI	CCATC	5 cut(s)	286, 316, 646, 652, 889
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	447
BfaI	CTAG	3 cut(s)	699, 1220, 1276
BfrI	CTTAAG	1 cut(s)	766
BglII	AGATCT	1 cut(s)	956
BisI	GCNGC	6 cut(s)	443, 534, 813, 849, 1212, 1235
BlsI	GCNGC	6 cut(s)	444, 535, 814, 850, 1213, 1236
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	2 cut(s)	295, 1151
BmgBI	CACGTC	1 cut(s)	1063
BmgT120I	GGNCC	3 cut(s)	295, 448, 1151
BmiI	GGNNCC	2 cut(s)	297, 1152
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	803
BmtI	GCTAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	845
BsaHI	GRCGYC	2 cut(s)	171, 361
BsaJI	CCNNGG	2 cut(s)	184, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	981
BseDI	CCNNGG	2 cut(s)	184, 464
BseGI	GGATG	4 cut(s)	327, 900, 986, 1263
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	2 cut(s)	170, 954
BseXI	GCAGC	6 cut(s)	454, 520, 799, 835, 1198, 1246
BsgI	GTGCAG	2 cut(s)	461, 798
BshFI	GGCC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	168, 446
BslFI	GGGAC	3 cut(s)	124, 482, 503
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	3 cut(s)	124, 482, 503
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	559, 835, 956
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	297, 1152
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	1 cut(s)	554
BspQI	GCTCTTC	1 cut(s)	969
BspTI	CTTAAG	1 cut(s)	766
BsrBI	CCGCTC	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	981
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	184, 464
BssMI	GATC	3 cut(s)	559, 835, 956
BssNI	GRCGYC	2 cut(s)	171, 361
BssT1I	CCWWGG	2 cut(s)	184, 464
Bst4CI	ACNGT	2 cut(s)	1057, 1116
Bst6I	CTCTTC	5 cut(s)	8, 198, 969, 1020, 1036
BstACI	GRCGYC	2 cut(s)	171, 361
BstAFI	CTTAAG	1 cut(s)	766
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	3 cut(s)	73, 169, 700
BstDEI	CTNAG	1 cut(s)	1163
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	4 cut(s)	327, 900, 986, 1263
BstHHI	GCGC	2 cut(s)	885, 1174
BstKTI	GATC	3 cut(s)	562, 838, 959
BstMBI	GATC	3 cut(s)	559, 835, 956
BstMWI	GCNNNNNNNGC	2 cut(s)	739, 1220
BstNSI	RCATGY	1 cut(s)	1094
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	6 cut(s)	454, 520, 799, 835, 1198, 1246
BstX2I	RGATCY	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	956
BsuRI	GGCC	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	1063
BtsCI	GGATG	4 cut(s)	327, 900, 986, 1263
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	73, 169, 700
CfoI	GCGC	2 cut(s)	885, 1174
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	295, 448, 1151
CseI	GACGC	3 cut(s)	160, 316, 350
Csp6I	GTAC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	7 cut(s)	608, 622, 713, 723, 1091, 1175, 1196
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	1163
DpnI	GATC	3 cut(s)	561, 837, 958
DpnII	GATC	3 cut(s)	559, 835, 956
Eam1104I	CTCTTC	5 cut(s)	8, 198, 969, 1020, 1036
EarI	CTCTTC	5 cut(s)	8, 198, 969, 1020, 1036
Eco130I	CCWWGG	2 cut(s)	184, 464
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	295, 1151
Eco57I	CTGAAG	1 cut(s)	728
Eco72I	CACGTG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	184, 464
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	184, 464
FaeI	CATG	7 cut(s)	611, 625, 716, 726, 1094, 1178, 1199
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	3 cut(s)	124, 482, 503
FatI	CATG	7 cut(s)	607, 621, 712, 722, 1090, 1174, 1195
FauNDI	CATATG	1 cut(s)	1125
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	6 cut(s)	443, 534, 813, 849, 1212, 1235
FokI	GGATG	4 cut(s)	334, 907, 973, 1270
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	6 cut(s)	443, 534, 813, 849, 1212, 1235
FspAI	RTGCGCAY	1 cut(s)	1173
FspBI	CTAG	3 cut(s)	699, 1220, 1276
FspI	TGCGCA	1 cut(s)	1173
GlaI	GCGC	2 cut(s)	884, 1173
GluI	GCNGC	6 cut(s)	443, 534, 813, 849, 1212, 1235
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	2 cut(s)	168, 446
HgaI	GACGC	3 cut(s)	160, 316, 350
HhaI	GCGC	2 cut(s)	885, 1174
Hin1I	GRCGYC	2 cut(s)	171, 361
Hin1II	CATG	7 cut(s)	611, 625, 716, 726, 1094, 1178, 1199
Hin6I	GCGC	2 cut(s)	883, 1172
HinP1I	GCGC	2 cut(s)	883, 1172
HincII	GTYRAC	1 cut(s)	1060
HindII	GTYRAC	1 cut(s)	1060
HindIII	AAGCTT	1 cut(s)	751
HinfI	GANTC	4 cut(s)	270, 1044, 1202, 1271
HpaII	CCGG	2 cut(s)	168, 446
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	3 cut(s)	661, 1048, 1060
Hpy188I	TCNGA	8 cut(s)	35, 110, 127, 283, 747, 774, 840, 973
Hpy188III	TCNNGA	5 cut(s)	478, 547, 920, 954, 1154
Hpy8I	GTNNAC	3 cut(s)	661, 1048, 1060
HpyAV	CCTTC	6 cut(s)	130, 158, 441, 547, 769, 1172
HpyCH4III	ACNGT	2 cut(s)	1057, 1116
HpyCH4IV	ACGT	2 cut(s)	844, 1062
HpyCH4V	TGCA	7 cut(s)	405, 442, 621, 722, 784, 815, 1214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	739, 1220
HpyF3I	CTNAG	1 cut(s)	1163
HpySE526I	ACGT	2 cut(s)	844, 1062
Hsp92I	GRCGYC	2 cut(s)	171, 361
Hsp92II	CATG	7 cut(s)	611, 625, 716, 726, 1094, 1178, 1199
HspAI	GCGC	2 cut(s)	883, 1172
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	3 cut(s)	559, 835, 956
LguI	GCTCTTC	1 cut(s)	969
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	6 cut(s)	454, 520, 799, 835, 1198, 1246
LweI	GCATC	1 cut(s)	803
MaeI	CTAG	3 cut(s)	699, 1220, 1276
MaeII	ACGT	2 cut(s)	844, 1062
MaeIII	GTNAC	4 cut(s)	53, 172, 475, 1116
MalI	GATC	3 cut(s)	561, 837, 958
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	3 cut(s)	559, 835, 956
MboII	GAAGA	9 cut(s)	19, 22, 25, 209, 215, 611, 956, 1007, 1053
MflI	RGATCY	1 cut(s)	956
MhlI	GDGCHC	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	1053, 1211
MmeI	TCCRAC	4 cut(s)	133, 150, 196, 273
Mph1103I	ATGCAT	1 cut(s)	724
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	2 cut(s)	603, 1014
MseI	TTAA	6 cut(s)	627, 708, 756, 767, 788, 915
MslI	CAYNNNNRTG	1 cut(s)	717
MspCI	CTTAAG	1 cut(s)	766
MspI	CCGG	2 cut(s)	168, 446
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	739, 1220
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	447
NdeI	CATATG	1 cut(s)	1125
NdeII	GATC	3 cut(s)	559, 835, 956
NgoMIV	GCCGGC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	7 cut(s)	611, 625, 716, 726, 1094, 1178, 1199
NlaIV	GGNNCC	2 cut(s)	297, 1152
NmeAIII	GCCGAG	2 cut(s)	376, 1225
NmuCI	GTSAC	4 cut(s)	53, 172, 475, 1116
NsbI	TGCGCA	1 cut(s)	1173
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	1 cut(s)	1094
PciSI	GCTCTTC	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	603, 1014
PfeI	GAWTC	2 cut(s)	270, 1271
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	6 cut(s)	444, 535, 814, 850, 1213, 1236
PleI	GAGTC	2 cut(s)	1052, 1210
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	2 cut(s)	1052, 1210
Ppu21I	YACGTR	1 cut(s)	845
PspCI	CACGTG	1 cut(s)	845
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	297, 1152
PspPI	GGNCC	3 cut(s)	295, 448, 1151
PsuI	RGATCY	1 cut(s)	956
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	969
SaqAI	TTAA	6 cut(s)	627, 708, 756, 767, 788, 915
SatI	GCNGC	6 cut(s)	443, 534, 813, 849, 1212, 1235
Sau3AI	GATC	3 cut(s)	559, 835, 956
Sau96I	GGNCC	3 cut(s)	295, 448, 1151
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	1053, 1211
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	803
SinI	GGWCC	2 cut(s)	295, 1151
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	2 cut(s)	375, 766
SmoI	CTYRAG	2 cut(s)	375, 766
SsiI	CCGC	1 cut(s)	589
SspMI	CTAG	3 cut(s)	699, 1220, 1276
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	2 cut(s)	184, 464
TaaI	ACNGT	2 cut(s)	1057, 1116
TaiI	ACGT	2 cut(s)	847, 1065
TaqI	TCGA	3 cut(s)	151, 933, 1021
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	270, 1271
Tru1I	TTAA	6 cut(s)	627, 708, 756, 767, 788, 915
Tru9I	TTAA	6 cut(s)	627, 708, 756, 767, 788, 915
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	4 cut(s)	53, 172, 475, 1116
TseI	GCWGC	6 cut(s)	442, 533, 812, 848, 1211, 1234
Tsp45I	GTSAC	4 cut(s)	53, 172, 475, 1116
TspDTI	ATGAA	9 cut(s)	216, 262, 596, 975, 1007, 1023, 1097, 1112, 1191
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	473
Vha464I	CTTAAG	1 cut(s)	766
VpaK11BI	GGWCC	2 cut(s)	295, 1151
XapI	RAATTY	5 cut(s)	284, 312, 681, 982, 1158
XceI	RCATGY	1 cut(s)	1094
XmnI	GAANNNNTTC	2 cut(s)	603, 1014
XspI	CTAG	3 cut(s)	699, 1220, 1276
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.