Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003183

Physical Location & Seq

Genomic Coordinates Reverse (-)

54548372 .. 54551228

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGACGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCATGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGTGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAGCTTTAACAAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

255

Amino Acids

28.66

Weight (kDa)

9.12

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 197	4.9e-40	NmrA-like family
NAD_binding_10	PF13460	13 - 88	6.3e-07	NAD(P)H-binding
eIF3a_PCI_TPR-like	PF22591	191 - 251	3.4e-19	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34540
fragaria_vesca	FvH4_2g09101
malus_domestica	MD10G1073600.v1.1
prunus_persica	Prupe.8G094600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047931 RchiOBHm_Chr6g0264971
rosa_laevigata	RLG00000014226
rosa_multiflora	Rmu_sc0000546.1_g000069 Rmu_sc0001904.1_g000028 Rmu_sc0002012.1_g000015 Rmu_sc0011410.1_g000001 Rmu_sc0013926.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432070 Rroxscaffold_3G00223730 Rroxscaffold_3G00263810 Rroxscaffold_7G00203120
rosa_rugosa	Rorug06G0014000
rosa_samantha	Rh2BG386400 Rh2BG445100 Rh4AG031500 Rh5BG325600 Rh5DG123400 Rh5DG336500 Rh6AG135600 Rh6AG170100 Rh6AG179200 Rh6AG395000 Rh6BG132800 Rh6CG131500 Rh6DG118500
rosa_wichuraiana	Rw1G014730 Rw2G035680 Rw4G013460 Rw5G032320 Rw6G011700 Rw7G015070 Rw7G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	591
AciI	CCGC	1 cut(s)	589
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	3 cut(s)	284, 312, 681
AcuI	CTGAAG	1 cut(s)	728
AcyI	GRCGYC	2 cut(s)	171, 361
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	342, 574, 599, 730
AluBI	AGCT	6 cut(s)	374, 420, 533, 673, 733, 752
AluI	AGCT	6 cut(s)	374, 420, 533, 673, 733, 752
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	442, 533
ApoI	RAATTY	3 cut(s)	284, 312, 681
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	295, 448
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	47, 80
AsuNHI	GCTAGC	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	454, 520
BccI	CCATC	4 cut(s)	286, 316, 646, 652
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BcnI	CCSGG	1 cut(s)	447
BfaI	CTAG	1 cut(s)	699
BisI	GCNGC	2 cut(s)	443, 534
BlsI	GCNGC	2 cut(s)	444, 535
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	295, 448
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	447
BsaHI	GRCGYC	2 cut(s)	171, 361
BsaJI	CCNNGG	2 cut(s)	184, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	184, 464
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	454, 520
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	168, 446
BslFI	GGGAC	3 cut(s)	124, 482, 503
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	3 cut(s)	124, 482, 503
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	184, 464
BssMI	GATC	1 cut(s)	559
BssNI	GRCGYC	2 cut(s)	171, 361
BssT1I	CCWWGG	2 cut(s)	184, 464
Bst6I	CTCTTC	2 cut(s)	8, 198
BstACI	GRCGYC	2 cut(s)	171, 361
BstC8I	GCNNGC	3 cut(s)	73, 169, 700
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	454, 520
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	73, 169, 700
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	295, 448
CseI	GACGC	3 cut(s)	160, 316, 350
Csp6I	GTAC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	5 cut(s)	377, 608, 622, 713, 723
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	8, 198
EarI	CTCTTC	2 cut(s)	8, 198
Eco130I	CCWWGG	2 cut(s)	184, 464
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	728
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	184, 464
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	184, 464
FaeI	CATG	5 cut(s)	380, 611, 625, 716, 726
FaiI	YATR	8 cut(s)	378, 414, 609, 623, 666, 714, 720, 724
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	3 cut(s)	124, 482, 503
FatI	CATG	5 cut(s)	376, 607, 621, 712, 722
Fnu4HI	GCNGC	2 cut(s)	443, 534
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	443, 534
FspBI	CTAG	1 cut(s)	699
GluI	GCNGC	2 cut(s)	443, 534
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	2 cut(s)	168, 446
HgaI	GACGC	3 cut(s)	160, 316, 350
Hin1I	GRCGYC	2 cut(s)	171, 361
Hin1II	CATG	5 cut(s)	380, 611, 625, 716, 726
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	2 cut(s)	168, 446
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	6 cut(s)	35, 110, 127, 163, 283, 747
Hpy188III	TCNNGA	2 cut(s)	478, 547
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	130, 158, 441, 547
HpyCH4V	TGCA	4 cut(s)	405, 442, 621, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
Hsp92I	GRCGYC	2 cut(s)	171, 361
Hsp92II	CATG	5 cut(s)	380, 611, 625, 716, 726
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	2 cut(s)	454, 520
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	53, 172, 475
MalI	GATC	1 cut(s)	561
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	1 cut(s)	559
MboII	GAAGA	6 cut(s)	19, 22, 25, 209, 215, 611
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	5 cut(s)	284, 312, 406, 522, 681
MmeI	TCCRAC	4 cut(s)	133, 150, 196, 273
MnlI	CCTC	5 cut(s)	86, 167, 191, 461, 471
Mph1103I	ATGCAT	1 cut(s)	724
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	4 cut(s)	627, 708, 755, 766
MslI	CAYNNNNRTG	1 cut(s)	717
MspI	CCGG	2 cut(s)	168, 446
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	739
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	1 cut(s)	559
NgoMIV	GCCGGC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	5 cut(s)	380, 611, 625, 716, 726
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	3 cut(s)	53, 172, 475
NsiI	ATGCAT	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	444, 535
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	295, 448
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	4 cut(s)	627, 708, 755, 766
SatI	GCNGC	2 cut(s)	443, 534
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	2 cut(s)	295, 448
ScaI	AGTACT	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse9I	AATT	5 cut(s)	284, 312, 406, 522, 681
SsiI	CCGC	1 cut(s)	589
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	2 cut(s)	184, 464
TaqI	TCGA	1 cut(s)	151
TasI	AATT	5 cut(s)	284, 312, 406, 522, 681
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	4 cut(s)	627, 708, 755, 766
Tru9I	TTAA	4 cut(s)	627, 708, 755, 766
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	53, 172, 475
TseI	GCWGC	2 cut(s)	442, 533
Tsp45I	GTSAC	3 cut(s)	53, 172, 475
TspDTI	ATGAA	2 cut(s)	262, 596
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	284, 312, 681
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	1 cut(s)	699
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.