Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

16648528 .. 16651029

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTGTCTTCTTCTTCTCGTTGCCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACACCGGAAAAGATGAGGAGAAGCAAGTAATTGAAGATCATGAAATCACCAACAGGGTTTTTCTCGATGTTGATATTGATGGCCAACGCTTAGGCAGGATTGTTATCGGACTATATGGCACTGTTGTACCCAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGGGAGAAGGGTAAAACCTCAAGCGGAAAGCCTTTACATTATAAGGGAACACCATTTCATCGTATAATATCTGGATTTGTAATCCAAGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGACTCAATCTATGGTGGAACCTTTCCTGACGAAAATTTCAAGATACAGCATTCACACGCAGGTATGGTAGCAATGGCTAATACAGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGAAGGAGAACATGTGGTGTTGGGAAAGGTGATACAAGGAATGGACAATGTATTCGCCATTGAAGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGGAGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

224

Amino Acids

24.59

Weight (kDa)

6.38

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	52 - 211	1.8e-44	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	425
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	232, 409
AfaI	GTAC	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	88, 122, 415, 578
AjnI	CCWGG	2 cut(s)	32, 608
AluBI	AGCT	2 cut(s)	510, 587
AluI	AGCT	2 cut(s)	510, 587
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	637
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	2 cut(s)	232, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	127, 371, 556
AsuNHI	GCTAGC	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BalI	TGGCCA	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	32, 67
BccI	CCATC	2 cut(s)	161, 356
BciT130I	CCWGG	2 cut(s)	34, 610
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	2 cut(s)	26, 225
BfuAI	ACCTGC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	34, 610
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	2 cut(s)	34, 610
BmtI	GCTAGC	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	32, 67
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	32, 337, 355, 608
BsaWI	WCCGGW	2 cut(s)	92, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	34, 610
BseDI	CCNNGG	4 cut(s)	32, 337, 355, 608
BseGI	GGATG	1 cut(s)	667
BseJI	GATNNNNATC	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	453
BseRI	GAGGAG	2 cut(s)	119, 357
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	93, 464
BsmAI	GTCTC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	12, 124, 642
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	425
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	453
BssECI	CCNNGG	4 cut(s)	32, 337, 355, 608
BssMI	GATC	3 cut(s)	12, 124, 642
BssT1I	CCWWGG	2 cut(s)	337, 355
Bst2UI	CCWGG	2 cut(s)	34, 610
Bst4CI	ACNGT	4 cut(s)	211, 226, 499, 599
Bst6I	CTCTTC	2 cut(s)	89, 660
BstC8I	GCNNGC	2 cut(s)	479, 508
BstDEI	CTNAG	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	15, 127, 645
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	12, 124, 642
BstNI	CCWGG	2 cut(s)	34, 610
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	32, 608
BstSFI	CTRYAG	2 cut(s)	26, 225
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	2 cut(s)	32, 67
BstX2I	RGATCY	2 cut(s)	12, 642
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	2 cut(s)	12, 642
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	2 cut(s)	207, 604
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	2 cut(s)	479, 508
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	128, 356, 527
CviJI	RGCY	9 cut(s)	31, 171, 242, 283, 452, 477, 506, 510, 587
CviKI_1	RGCY	9 cut(s)	31, 171, 242, 283, 452, 477, 506, 510, 587
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	3 cut(s)	14, 126, 644
DpnII	GATC	3 cut(s)	12, 124, 642
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	89, 660
EarI	CTCTTC	2 cut(s)	89, 660
Eco130I	CCWWGG	2 cut(s)	337, 355
Eco47I	GGWCC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	32, 608
EcoT14I	CCWWGG	2 cut(s)	337, 355
ErhI	CCWWGG	2 cut(s)	337, 355
FaeI	CATG	3 cut(s)	131, 359, 530
FatI	CATG	3 cut(s)	127, 355, 526
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	93, 464
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	131, 359, 530
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	3 cut(s)	377, 467, 632
HpaII	CCGG	2 cut(s)	93, 464
HphI	GGTGA	3 cut(s)	127, 371, 556
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	6 cut(s)	128, 152, 324, 401, 415, 636
HpyAV	CCTTC	3 cut(s)	253, 512, 572
HpyCH4III	ACNGT	4 cut(s)	211, 226, 499, 599
HpyCH4V	TGCA	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	131, 359, 530
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	3 cut(s)	12, 124, 642
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	584
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	14, 126, 644
MboI	GATC	3 cut(s)	12, 124, 642
MboII	GAAGA	7 cut(s)	32, 35, 38, 67, 76, 134, 625
MflI	RGATCY	2 cut(s)	12, 642
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	117, 232, 409
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	4 cut(s)	80, 97, 280, 335
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	2 cut(s)	93, 464
MspR9I	CCNGG	2 cut(s)	34, 610
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	2 cut(s)	34, 610
MvnI	CGCG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	12, 124, 642
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	3 cut(s)	131, 359, 530
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	530
PagI	TCATGA	1 cut(s)	127
PciI	ACATGT	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	467, 632
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PscI	ACATGT	1 cut(s)	526
PsiI	TTATAA	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	32, 608
PspGI	CCWGG	2 cut(s)	32, 608
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	12, 642
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	501
Sau3AI	GATC	3 cut(s)	12, 124, 642
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	34, 610
SetI	ASST	8 cut(s)	38, 272, 398, 439, 512, 546, 583, 589
SfcI	CTRYAG	2 cut(s)	26, 225
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	117, 232, 409
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	32, 608
StyI	CCWWGG	2 cut(s)	337, 355
TaaI	ACNGT	4 cut(s)	211, 226, 499, 599
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	117, 232, 409
TfiI	GAWTC	2 cut(s)	467, 632
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	214, 604
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	144, 299
TspRI	CASTG	2 cut(s)	214, 604
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	2 cut(s)	232, 409
XceI	RCATGY	1 cut(s)	530
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.