Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

81821422 .. 81822399

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCCAATACTTTCATGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACAAAAAAATGTTGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAATGTCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGTGGAGACATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTTATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTATTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

108

Amino Acids

11.61

Weight (kDa)

9.48

Isoelectric Point (pI)

11.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	8 - 105	1e-19	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	51, 250
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	149, 226
Alw26I	GTCTC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	182, 274, 295
AvaII	GGWCC	1 cut(s)	272
BccI	CCATC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	41, 294
BstAUI	TGTACA	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	50, 249
CviAII	CATG	4 cut(s)	15, 142, 167, 242
CviJI	RGCY	2 cut(s)	288, 317
CviKI_1	RGCY	2 cut(s)	288, 317
CviQI	GTAC	2 cut(s)	50, 249
Eco47I	GGWCC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	272
FaeI	CATG	4 cut(s)	18, 145, 170, 245
FatI	CATG	4 cut(s)	14, 141, 166, 241
FspBI	CTAG	1 cut(s)	318
Hin1II	CATG	4 cut(s)	18, 145, 170, 245
HinfI	GANTC	3 cut(s)	145, 188, 278
HphI	GGTGA	3 cut(s)	182, 274, 295
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	41, 294
HpyCH4V	TGCA	1 cut(s)	245
Hsp92II	CATG	4 cut(s)	18, 145, 170, 245
LpnPI	CCDG	5 cut(s)	29, 120, 231, 255, 288
MaeI	CTAG	1 cut(s)	318
MluCI	AATT	2 cut(s)	21, 220
MmeI	TCCRAC	1 cut(s)	43
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	171, 240
NlaIII	CATG	4 cut(s)	18, 145, 170, 245
NspI	RCATGY	1 cut(s)	245
PagI	TCATGA	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	145, 188, 278
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	272
PspPPI	RGGWCCY	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	51, 250
RsaNI	GTAC	2 cut(s)	50, 249
RseI	CAYNNNNRTG	2 cut(s)	171, 240
SaqAI	TTAA	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	272
SetI	ASST	6 cut(s)	48, 76, 82, 154, 250, 277
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	171, 240
Sse9I	AATT	2 cut(s)	21, 220
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	41, 294
TaqI	TCGA	1 cut(s)	191
TasI	AATT	2 cut(s)	21, 220
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	3 cut(s)	145, 188, 278
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspDTI	ATGAA	4 cut(s)	110, 130, 155, 201
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	245
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.