Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

19488285 .. 19490332

Gene Structure 2048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTGGAAGATCTTAGCAACAGGTAGATTTTCTTTCATAGCACTGCAGTCGAAGAGTTATCCCATTCAGCAGGGTGGTGACTACGCTGAGAGCTTGAAGGAGTTCAGTGCCAATAACATTAGGGACACCTTCAGAGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTGTACCTGGATATTGTTATTGAGGAACAGCGCTTAGGTAGAATTGTGATTGGATTATACAGTCAGGTTGTACCAAAAACTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAACGCCATTTCATCGTATTGTATCTGGGTTCATGATTCAAGGTGGAGATATCATTCATGGTGATGGGAAGGGATATGAATTGATATATGGTGGCACTTTTGTTGATGAGAATTTCAAAGTGAAACATTCACACGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAATTCTTTATCACCACAATCAAGGCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

181

Amino Acids

20.05

Weight (kDa)

7.85

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	64 - 177	1.1e-30	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	262, 439
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	4 cut(s)	156, 179, 246, 469
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	4 cut(s)	97, 260, 368, 445
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	281
Alw44I	GTGCAC	1 cut(s)	277
AlwNI	CAGNNNCTG	2 cut(s)	470, 494
Aor51HI	AGCGCT	1 cut(s)	206
ApaLI	GTGCAC	1 cut(s)	277
ApoI	RAATTY	2 cut(s)	262, 439
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	89, 401, 493, 514
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	281
BccI	CCATC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	455
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	236, 256, 472
Bst6I	CTCTTC	2 cut(s)	47, 132
BstDEI	CTNAG	3 cut(s)	13, 87, 208
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 112
BveI	ACCTGC	1 cut(s)	455
CaiI	CAGNNNCTG	2 cut(s)	470, 494
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	4 cut(s)	155, 178, 245, 468
CviAII	CATG	2 cut(s)	361, 386
CviJI	RGCY	3 cut(s)	93, 507, 536
CviKI_1	RGCY	3 cut(s)	93, 507, 536
CviQI	GTAC	4 cut(s)	155, 178, 245, 468
DdeI	CTNAG	3 cut(s)	13, 87, 208
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	47, 132
EarI	CTCTTC	2 cut(s)	47, 132
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	491
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	379
FaeI	CATG	2 cut(s)	364, 389
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	360, 385
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	208
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	364, 389
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	364, 497
HphI	GGTGA	4 cut(s)	89, 401, 493, 514
Hpy166II	GTNNAC	2 cut(s)	178, 279
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	2 cut(s)	178, 279
HpyAV	CCTTC	3 cut(s)	91, 139, 391
HpyCH4III	ACNGT	3 cut(s)	236, 256, 472
HpyCH4V	TGCA	2 cut(s)	46, 279
HpyF3I	CTNAG	3 cut(s)	13, 87, 208
Hsp92II	CATG	2 cut(s)	364, 389
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	19, 64, 149, 161
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	5 cut(s)	216, 262, 407, 439, 512
MnlI	CCTC	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	364, 389
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	364, 497
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	491
PspPPI	RGGWCCY	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	2 cut(s)	470, 494
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	4 cut(s)	156, 179, 246, 469
RsaNI	GTAC	4 cut(s)	155, 178, 245, 468
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	5 cut(s)	216, 262, 407, 439, 512
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	236, 256, 472
TaqI	TCGA	1 cut(s)	50
TasI	AATT	5 cut(s)	216, 262, 407, 439, 512
TfiI	GAWTC	2 cut(s)	364, 497
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	48, 112
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	25, 329, 349, 374, 420
TspRI	CASTG	2 cut(s)	48, 112
VneI	GTGCAC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	262, 439
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.