Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

9627521 .. 9630570

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCTTCGCCGACCCCAAACCCGCCGTCGAGAAAGAGTCTTTTGAGTCCACGCCGATTTCACATCCATCCATCTCACCAAAGGCTCAAGAACGCCGATTCCAGCGTGGGGGAGGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAAATGTTGAAAATTTCAGGGCATTGTGCATAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCTCTATAAGGGAACGCCATTTCATCGTATCGTATTTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTTATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTATTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCGAGTTCGTGTTTTTTGGTGCCTCGTGGATCAGTTACTTTTCTTTTGCCTCTATATTCTCTGGAAAGTGATAAAATGAACAAAACAAAGTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

178

Amino Acids

19.51

Weight (kDa)

9.84

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	36 - 147	9.5e-28	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	457
AciI	CCGC	2 cut(s)	23, 276
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	166, 343
AfaI	GTAC	2 cut(s)	150, 373
AfiI	CCNNNNNNNGG	2 cut(s)	108, 229
AgsI	TTSAA	3 cut(s)	164, 272, 349
AloI	GAACNNNNNNTCC	2 cut(s)	83, 115
AlwI	GGATC	1 cut(s)	475
AlwNI	CAGNNNCTG	1 cut(s)	398
ApoI	RAATTY	2 cut(s)	166, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	68, 305, 397, 418
AvaII	GGWCC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	462
BccI	CCATC	3 cut(s)	75, 79, 290
BceAI	ACGGC	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 229
Bse8I	GATNNNNATC	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	314
BseGI	GGATG	2 cut(s)	63, 67
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	108, 229
BseRI	GAGGAG	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	108, 229
Bsp143I	GATC	1 cut(s)	467
BspACI	CCGC	2 cut(s)	23, 276
BspDI	ATCGAT	1 cut(s)	314
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	457
BssMI	GATC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	140, 417
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	63, 67
BstKTI	GATC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	314
BsuTUI	ATCGAT	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	63, 67
BveI	ACCTGC	1 cut(s)	359
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	149, 372
CviAII	CATG	3 cut(s)	265, 290, 365
CviJI	RGCY	2 cut(s)	85, 411
CviKI_1	RGCY	2 cut(s)	85, 411
CviQI	GTAC	2 cut(s)	149, 372
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
EciI	GGCGGA	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	3 cut(s)	268, 293, 368
FatI	CATG	3 cut(s)	264, 289, 364
FauI	CCCGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	50, 54
Hin1II	CATG	3 cut(s)	268, 293, 368
HinfI	GANTC	6 cut(s)	37, 46, 98, 268, 311, 401
HphI	GGTGA	4 cut(s)	68, 305, 397, 418
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188III	TCNNGA	4 cut(s)	30, 88, 265, 500
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	15, 295
HpyCH4III	ACNGT	2 cut(s)	140, 417
HpyCH4V	TGCA	2 cut(s)	183, 368
Hsp92II	CATG	3 cut(s)	268, 293, 368
Kzo9I	GATC	1 cut(s)	467
LpnPI	CCDG	7 cut(s)	115, 128, 157, 354, 378, 411, 485
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	1 cut(s)	469
MboI	GATC	1 cut(s)	467
MluCI	AATT	3 cut(s)	120, 166, 343
MlyI	GAGTC	2 cut(s)	46, 55
MnlI	CCTC	4 cut(s)	106, 233, 471, 498
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	294, 363
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	3 cut(s)	268, 293, 368
NlaIV	GGNNCC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	368
PagI	TCATGA	1 cut(s)	264
PfeI	GAWTC	4 cut(s)	98, 268, 311, 401
PleI	GAGTC	2 cut(s)	45, 54
PpsI	GAGTC	2 cut(s)	45, 54
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	150, 373
RsaNI	GTAC	2 cut(s)	149, 372
RseI	CAYNNNNRTG	2 cut(s)	294, 363
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	467
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	2 cut(s)	46, 55
SetI	ASST	5 cut(s)	147, 199, 205, 373, 400
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	294, 363
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	120, 166, 343
SsiI	CCGC	2 cut(s)	23, 276
TaaI	ACNGT	2 cut(s)	140, 417
TaqI	TCGA	2 cut(s)	29, 314
TasI	AATT	3 cut(s)	120, 166, 343
TfiI	GAWTC	4 cut(s)	98, 268, 311, 401
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TspDTI	ATGAA	5 cut(s)	233, 253, 278, 324, 530
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	166, 343
XceI	RCATGY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.