Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

1478100 .. 1481679

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCTCGAGCCATCTCTGTTCTGCTCCAGCCCCGATCCCTCCTCCTCTTCACCGTCGTCGGAATTTTCCTTATTTTCTTTTTCACTTCCACCGAGAAAAAGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCGCTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAATGGAAAAAAACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCGTGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGGTCACAGTTCTTTATCACCACAATCAAGGCTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

171

Amino Acids

19.06

Weight (kDa)

8.63

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	53 - 170	4.2e-32	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	63, 232, 409
AfaI	GTAC	3 cut(s)	126, 216, 439
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	230, 338, 415
AjnI	CCWGG	1 cut(s)	150
Alw21I	GWGCWC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	2 cut(s)	440, 464
Ama87I	CYCGRG	1 cut(s)	6
Aor51HI	AGCGCT	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	63, 232, 409
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	4 cut(s)	43, 371, 463, 484
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	251
BccI	CCATC	2 cut(s)	20, 356
BciT130I	CCWGG	1 cut(s)	152
BfaI	CTAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	152
BseCI	ATCGAT	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	32, 35
BseSI	GKGCMC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	342
BspDI	ATCGAT	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	392
BssMI	GATC	1 cut(s)	35
BssNAI	GTATAC	1 cut(s)	148
Bst1107I	GTATAC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	5 cut(s)	55, 206, 226, 442, 483
Bst6I	CTCTTC	2 cut(s)	53, 102
BstDEI	CTNAG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	251
BstZ17I	GTATAC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	380
BveI	ACCTGC	1 cut(s)	425
CaiI	CAGNNNCTG	2 cut(s)	440, 464
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	125, 215, 438
CviAII	CATG	2 cut(s)	331, 431
CviJI	RGCY	3 cut(s)	11, 31, 506
CviKI_1	RGCY	3 cut(s)	11, 31, 506
CviQI	GTAC	3 cut(s)	125, 215, 438
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eam1104I	CTCTTC	2 cut(s)	53, 102
EarI	CTCTTC	2 cut(s)	53, 102
EciI	GGCGGA	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	461
Eco47III	AGCGCT	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	349
FaeI	CATG	2 cut(s)	334, 434
FatI	CATG	2 cut(s)	330, 430
FblI	GTMKAC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	178
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	334, 434
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	334, 377, 467
HphI	GGTGA	4 cut(s)	43, 371, 463, 484
Hpy166II	GTNNAC	2 cut(s)	148, 249
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	2 cut(s)	148, 249
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	5 cut(s)	55, 206, 226, 442, 483
HpyCH4V	TGCA	2 cut(s)	249, 434
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	334, 434
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	40, 119, 131
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	4 cut(s)	63, 186, 232, 409
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	15, 50, 53, 56, 97, 160
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	334, 434
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	334, 377, 467
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	461
PspPPI	RGGWCCY	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	6
PstNI	CAGNNNCTG	2 cut(s)	440, 464
RsaI	GTAC	3 cut(s)	126, 216, 439
RsaNI	GTAC	3 cut(s)	125, 215, 438
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	9 cut(s)	130, 153, 184, 213, 265, 271, 398, 439, 466
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	4 cut(s)	63, 186, 232, 409
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	5 cut(s)	55, 206, 226, 442, 483
TaqI	TCGA	2 cut(s)	7, 380
TasI	AATT	4 cut(s)	63, 186, 232, 409
TfiI	GAWTC	3 cut(s)	334, 377, 467
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	477
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	299, 319, 390
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	3 cut(s)	63, 232, 409
XceI	RCATGY	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	6
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.