Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

13910258 .. 13913098

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCGTCGAGAGATCTCCGTCCTGCTTCAGCCTCGATCCCTCATCGTCTGCTTCGTCCTCGCCATTTTCCTAATTTTCGTTTTCTCGTCCACCCATAAGAAGGAGGAAGCGCAAATAGAAGAGGTGCCTGAAATTACCCACAGAGTATTCCTTGATATTGATATTGACGGACAGCACTTAGGTAGAATCGTGATTGGATTATACGGTGAGGTTGTTCCAAAAACTGTTGAAAATTTTAGGGCGTTGTGCACAGGGGAAAAGGGAAAAGGTGTCAAGGGGAAACTACTCCACTATAAGGGAATACCATTTCATCGTATAGTATCTGGGTTCATGATTCAAGGTGGAGATATTGTTTCTCGTGATGGGAAGGGATATGAATCTATATATGGCGGCACATTTCCTGATGAGAATTTCAGAGTGAAACATTCACACGCAGGTGTCGTTTCTATGGTAAATTCAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATTAAAGCTAGTTGGTTGGACGGGGAGCATGTTGTCTTTGGCAAGGTTATTCAGGGAATGGACATGGTGTACACAATCGAAGGAGGGGCTGGAACCTACAGTGGAAAACCGAGAAAGAAGGTTGTAATTGCTGAATCAGGAGAGATACCCAAGAGCCAGTGGGATGAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

225

Amino Acids

24.77

Weight (kDa)

6.71

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	51 - 212	1e-46	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	232, 409, 454
AcuI	CTGAAG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	2 cut(s)	100, 295
AgsI	TTSAA	2 cut(s)	230, 338
AleI	CACNNNNGTG	1 cut(s)	435
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	464
ApaLI	GTGCAC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	232, 409, 454
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	218, 484
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	251
BccI	CCATC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	595
BfuAI	ACCTGC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	126, 592
BsaBI	GATNNNNATC	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 295
Bse1I	ACTGG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	376
BseGI	GGATG	1 cut(s)	667
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	100, 295
BseNI	ACTGG	1 cut(s)	655
BseSI	GKGCMC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	100, 295
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	12, 35
BspACI	CCGC	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	126, 592
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	655
BssMI	GATC	2 cut(s)	12, 35
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	206, 226, 483, 599
Bst6I	CTCTTC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	667
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	15, 38
BstMBI	GATC	2 cut(s)	12, 35
BstNSI	RCATGY	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	2 cut(s)	604, 662
BveI	ACCTGC	1 cut(s)	425
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	331, 527, 562
CviJI	RGCY	5 cut(s)	31, 477, 506, 587, 654
CviKI_1	RGCY	5 cut(s)	31, 477, 506, 587, 654
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	2 cut(s)	14, 37
DpnII	GATC	2 cut(s)	12, 35
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	461
FaeI	CATG	3 cut(s)	334, 530, 565
FatI	CATG	3 cut(s)	330, 526, 561
Fnu4HI	GCNGC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	334, 530, 565
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	5 cut(s)	186, 334, 377, 467, 632
HphI	GGTGA	2 cut(s)	218, 484
Hpy166II	GTNNAC	4 cut(s)	90, 249, 568, 570
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	7 cut(s)	8, 190, 331, 359, 401, 459, 636
Hpy8I	GTNNAC	4 cut(s)	90, 249, 568, 570
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	4 cut(s)	94, 361, 572, 610
HpyCH4III	ACNGT	4 cut(s)	206, 226, 483, 599
HpyCH4V	TGCA	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	334, 530, 565
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	12, 35
LmnI	GCTCC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	507
MalI	GATC	2 cut(s)	14, 37
MboI	GATC	2 cut(s)	12, 35
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	7 cut(s)	72, 132, 232, 409, 454, 498, 624
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	42, 50, 68, 97, 115, 202, 575, 658
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	435
NdeII	GATC	2 cut(s)	12, 35
NlaIII	CATG	3 cut(s)	334, 530, 565
NlaIV	GGNNCC	2 cut(s)	126, 592
NspI	RCATGY	1 cut(s)	530
OliI	CACNNNNGTG	1 cut(s)	435
PagI	TCATGA	1 cut(s)	330
PaqCI	CACCTGC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 438
PfeI	GAWTC	5 cut(s)	186, 334, 377, 467, 632
PkrI	GCNGC	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	126, 592
PspPI	GGNCC	1 cut(s)	461
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	2 cut(s)	12, 35
Sau96I	GGNCC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	595
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	7 cut(s)	72, 132, 232, 409, 454, 498, 624
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	206, 226, 483, 599
TaqI	TCGA	3 cut(s)	7, 34, 576
TasI	AATT	7 cut(s)	72, 132, 232, 409, 454, 498, 624
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	5 cut(s)	186, 334, 377, 467, 632
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	604, 662
TspDTI	ATGAA	3 cut(s)	299, 319, 390
TspGWI	ACGGA	2 cut(s)	7, 183
TspRI	CASTG	2 cut(s)	604, 662
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	3 cut(s)	232, 409, 454
XceI	RCATGY	1 cut(s)	530
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.