Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

64163991 .. 64167108

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAACGTTAAGCTTGTTTGGGCTTTTGGATATATTAAACTCTATATGCTTCTAGCTTCTCTGGTTGAGTCAGAGATATTTTGTCTGCATGGTGGATTATCACCTTCAATCGAAAACCTTGATAACATAAGGAATTTTGATCGTGTTCAAGAGGATATACCTCTGGCCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTGAAGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

148

Amino Acids

16.16

Weight (kDa)

7.01

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	62 - 145	2.2e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AciI	CCGC	1 cut(s)	273
AclI	AACGTT	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	133, 340
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	108, 149, 269, 346
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	13, 56
AluI	AGCT	2 cut(s)	13, 56
Alw21I	GWGCWC	1 cut(s)	182
Alw44I	GTGCAC	1 cut(s)	178
AlwNI	CAGNNNCTG	2 cut(s)	371, 395
AoxI	GGCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	133, 340
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	4 cut(s)	93, 302, 394, 415
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	169
BfaI	CTAG	2 cut(s)	53, 438
BfuAI	ACCTGC	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	226
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	167
BspDI	ATCGAT	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	373, 414
Bst6I	CTCTTC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	182
Bsu15I	ATCGAT	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	356
CaiI	CAGNNNCTG	2 cut(s)	371, 395
CciI	TCATGA	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	4 cut(s)	89, 262, 287, 362
CviJI	RGCY	6 cut(s)	13, 23, 56, 167, 408, 437
CviKI_1	RGCY	6 cut(s)	13, 23, 56, 167, 408, 437
CviQI	GTAC	1 cut(s)	369
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	280
FaeI	CATG	4 cut(s)	92, 265, 290, 365
FatI	CATG	4 cut(s)	88, 261, 286, 361
FspBI	CTAG	2 cut(s)	53, 438
HaeIII	GGCC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	92, 265, 290, 365
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	4 cut(s)	68, 265, 308, 398
HphI	GGTGA	4 cut(s)	93, 302, 394, 415
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	149, 262
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	114, 292
HpyCH4III	ACNGT	2 cut(s)	373, 414
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	88, 180, 365
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	92, 265, 290, 365
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	47, 149, 154, 168, 181, 240, 351, 375, 408
MaeI	CTAG	2 cut(s)	53, 438
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	2 cut(s)	133, 340
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	145, 171
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	9, 36, 204
MslI	CAYNNNNRTG	2 cut(s)	291, 360
Msp20I	TGGCCA	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	92, 265, 290, 365
NspI	RCATGY	1 cut(s)	365
PagI	TCATGA	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	265, 308, 398
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	392
PspPPI	RGGWCCY	1 cut(s)	392
PstNI	CAGNNNCTG	2 cut(s)	371, 395
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	291, 360
SaqAI	TTAA	3 cut(s)	9, 36, 204
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	291, 360
Sse9I	AATT	2 cut(s)	133, 340
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	2 cut(s)	53, 438
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	373, 414
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	111, 311
TasI	AATT	2 cut(s)	133, 340
TfiI	GAWTC	3 cut(s)	265, 308, 398
Tru1I	TTAA	3 cut(s)	9, 36, 204
Tru9I	TTAA	3 cut(s)	9, 36, 204
TspDTI	ATGAA	5 cut(s)	17, 230, 250, 275, 321
VneI	GTGCAC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	133, 340
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	2 cut(s)	53, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.