Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

16909837 .. 16914492

Gene Structure 4656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCACACTTTCATCTTCAGTTTGAGGGTGTTTGGCTGCGTGTTATATCAGTTCTTTTGGTTGACCAGCTCCATCTTGGTGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTGTACCTGGATATTGTTATTGAGGAACAGCGCTTAGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAATGGAAAATTACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGTGGAGATATCATTCATGGTGATGGGAAGGGATATGAATTGATATATGGTGGCACTTTTGCTGATGAGAATTTCAAAGTGAAACATTCACACGCAGGTACTATTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAATTCTTTATCACCACAATCAAGGCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

147

Amino Acids

16.52

Weight (kDa)

6.14

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	53 - 144	8.3e-23	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	163, 340
AfaI	GTAC	3 cut(s)	105, 128, 370
AfeI	AGCGCT	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	269, 346
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw21I	GWGCWC	1 cut(s)	182
Alw44I	GTGCAC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor51HI	AGCGCT	1 cut(s)	155
ApaLI	GTGCAC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	2 cut(s)	163, 340
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	302, 394, 415
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	80, 287
BciT130I	CCWGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	395
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	104, 127, 369
CviAII	CATG	2 cut(s)	262, 287
CviJI	RGCY	4 cut(s)	36, 69, 408, 437
CviKI_1	RGCY	4 cut(s)	36, 69, 408, 437
CviQI	GTAC	3 cut(s)	104, 127, 369
DdeI	CTNAG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	280
FaeI	CATG	2 cut(s)	265, 290
FaiI	YATR	9 cut(s)	46, 120, 225, 263, 288, 306, 316, 318, 380
FatI	CATG	2 cut(s)	261, 286
Fnu4HI	GCNGC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	157
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	265, 290
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	2 cut(s)	265, 398
HphI	GGTGA	3 cut(s)	302, 394, 415
Hpy166II	GTNNAC	3 cut(s)	63, 127, 180
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	3 cut(s)	63, 127, 180
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	4, 180
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	265, 290
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	438
MboII	GAAGA	3 cut(s)	7, 98, 110
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	5 cut(s)	163, 212, 308, 340, 413
MnlI	CCTC	3 cut(s)	18, 76, 139
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	2 cut(s)	77, 291
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
NlaIII	CATG	2 cut(s)	265, 290
PagI	TCATGA	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	265, 398
PkrI	GCNGC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	392
PspPPI	RGGWCCY	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	105, 128, 370
RsaNI	GTAC	3 cut(s)	104, 127, 369
RseI	CAYNNNNRTG	2 cut(s)	77, 291
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	8 cut(s)	71, 109, 132, 196, 202, 274, 370, 397
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	77, 291
Sse9I	AATT	5 cut(s)	163, 212, 308, 340, 413
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	129
TasI	AATT	5 cut(s)	163, 212, 308, 340, 413
TfiI	GAWTC	2 cut(s)	265, 398
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	230, 250, 275, 321
VneI	GTGCAC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	163, 340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.