Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

66789515 .. 66792634

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGGTCACAGTTCTTTATCACCACAATCAAGGCTAGTTGGTTGGATGGGGAGCATGTCGTCTTCGGCAAGGTTATACAGGGCATGGACATGGTGTATGCAATTGAAGGAGGGGCTGGAACCTACAGTGGAAAGCCCAGAAAGAAGGTTGTTATTGCTGACTCAGGAGAAATACCCAAGGACAAGTGGGATGAGGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

114

Amino Acids

12.3

Weight (kDa)

5.46

Isoelectric Point (pI)

8.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 102	1e-27	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	62
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	8, 85, 248
AlwNI	CAGNNNCTG	2 cut(s)	110, 134
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	41, 133, 154
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	196
BccI	CCATC	2 cut(s)	26, 182
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	64, 262
BpiI	GAAGAC	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	46
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	193, 337
BseJI	GATNNNNATC	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	50
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	317
BspDI	ATCGAT	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	64, 262
BspMI	ACCTGC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	112, 153, 269
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	193, 337
BstNSI	RCATGY	2 cut(s)	104, 200
BstSFI	CTRYAG	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	193, 337
BtsIMutI	CAGTG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	95
CaiI	CAGNNNCTG	2 cut(s)	110, 134
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	5 cut(s)	26, 101, 197, 226, 232
CviJI	RGCY	3 cut(s)	176, 257, 277
CviKI_1	RGCY	3 cut(s)	176, 257, 277
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	5 cut(s)	29, 104, 200, 229, 235
FatI	CATG	5 cut(s)	25, 100, 196, 225, 231
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	1 cut(s)	177
Hin1II	CATG	5 cut(s)	29, 104, 200, 229, 235
HinfI	GANTC	4 cut(s)	4, 47, 137, 302
HphI	GGTGA	3 cut(s)	41, 133, 154
Hpy188III	TCNNGA	1 cut(s)	306
HpyAV	CCTTC	3 cut(s)	31, 242, 280
HpyCH4III	ACNGT	3 cut(s)	112, 153, 269
HpyCH4V	TGCA	2 cut(s)	104, 242
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	5 cut(s)	29, 104, 200, 229, 235
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	7 cut(s)	90, 114, 147, 206, 243, 291, 292
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	196
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	2 cut(s)	79, 243
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	245, 328
MslI	CAYNNNNRTG	3 cut(s)	30, 99, 230
MunI	CAATTG	1 cut(s)	243
NlaIII	CATG	5 cut(s)	29, 104, 200, 229, 235
NlaIV	GGNNCC	2 cut(s)	64, 262
NmuCI	GTSAC	1 cut(s)	147
NspI	RCATGY	2 cut(s)	104, 200
PfeI	GAWTC	3 cut(s)	4, 47, 137
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	64, 262
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
PstNI	CAGNNNCTG	2 cut(s)	110, 134
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	3 cut(s)	30, 99, 230
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	296
SetI	ASST	6 cut(s)	68, 109, 136, 216, 266, 291
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	3 cut(s)	30, 99, 230
Sse9I	AATT	2 cut(s)	79, 243
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	112, 153, 269
TaqI	TCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	79, 243
TfiI	GAWTC	3 cut(s)	4, 47, 137
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	14, 60
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	104, 200
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.