RLG00000015382

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003574
Physical Location & Seq
Forward (+)
65329962 .. 65332412
2451 bp
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UTR
Exon/CDS
Intron
RLM00000015382

Sequence Viewer

Length: 615 bp
ATGTTATATCAGTTCTTTAGGTTGACTAGCTCCATCTTGGTGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCGTTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAAGGGAAAAAAACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGGTCACAGTTCTTTATCACCACAATAAAGGCTAGTTGGTTGGATGGGGAGCATGTCGTCTTCGGCAAGGTTATACAGGGCATGGACATGGTGTATGCAATTGAAGGAGGGGCTGGAACCTACAGTGGAAAGCCCAGAAAGAAAGTTGTTATTGCTGACTCAGGAGAAATACCCAAGGACAAGTGGGATGAAGAAAGATGA

Protein Analysis

205

Amino Acids

22.65

Weight (kDa)

6.39

Isoelectric Point (pI)

20.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 33 - 191 2.4e-47 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 282
AcsI RAATTY 2 cut(s) 172, 349
AfaI GTAC 3 cut(s) 66, 156, 379
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 170, 278, 355, 518
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 187
AlwNI CAGNNNCTG 2 cut(s) 380, 404
ApaLI GTGCAC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 172, 349
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 3 cut(s) 311, 403, 424
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 3 cut(s) 41, 296, 452
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 2 cut(s) 27, 447
BfmI CTRYAG 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 334, 532
BmrFI CCNGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 466
Bsa29I ATCGAT 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 316
BseBI CCWGG 1 cut(s) 92
BseCI ATCGAT 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 2 cut(s) 463, 607
BseJI GATNNNNATC 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 332
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 191
BspACI CCGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 587
BspDI ATCGAT 1 cut(s) 320
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 334, 532
BspMI ACCTGC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 588
BssNAI GTATAC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 588
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 5 cut(s) 146, 166, 382, 423, 539
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 574
BstF5I GGATG 2 cut(s) 463, 607
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 374, 470
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 320
BtsCI GGATG 2 cut(s) 463, 607
BtsIMutI CAGTG 1 cut(s) 544
BveI ACCTGC 1 cut(s) 365
CaiI CAGNNNCTG 2 cut(s) 380, 404
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 3 cut(s) 65, 155, 378
CviAII CATG 6 cut(s) 271, 296, 371, 467, 496, 502
CviJI RGCY 4 cut(s) 30, 446, 527, 547
CviKI_1 RGCY 4 cut(s) 30, 446, 527, 547
CviQI GTAC 3 cut(s) 65, 155, 378
DdeI CTNAG 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 588
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 6 cut(s) 274, 299, 374, 470, 499, 505
FatI CATG 6 cut(s) 270, 295, 370, 466, 495, 501
FblI GTMKAC 1 cut(s) 87
FokI GGATG 1 cut(s) 470
FspBI CTAG 2 cut(s) 27, 447
Hin1II CATG 6 cut(s) 274, 299, 374, 470, 499, 505
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 4 cut(s) 274, 317, 407, 572
HphI GGTGA 3 cut(s) 311, 403, 424
Hpy166II GTNNAC 3 cut(s) 24, 88, 189
Hpy188III TCNNGA 2 cut(s) 271, 576
Hpy8I GTNNAC 3 cut(s) 24, 88, 189
HpyAV CCTTC 2 cut(s) 301, 512
HpyCH4III ACNGT 5 cut(s) 146, 166, 382, 423, 539
HpyCH4V TGCA 3 cut(s) 189, 374, 512
HpyF3I CTNAG 1 cut(s) 574
Hsp92II CATG 6 cut(s) 274, 299, 374, 470, 499, 505
LmnI GCTCC 2 cut(s) 35, 463
MaeI CTAG 2 cut(s) 27, 447
MaeIII GTNAC 1 cut(s) 417
MboII GAAGA 3 cut(s) 59, 71, 466
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 4 cut(s) 126, 172, 349, 513
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 3 cut(s) 37, 100, 515
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 4 cut(s) 38, 300, 369, 500
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 92
NlaIII CATG 6 cut(s) 274, 299, 374, 470, 499, 505
NlaIV GGNNCC 2 cut(s) 334, 532
NmuCI GTSAC 1 cut(s) 417
NspI RCATGY 2 cut(s) 374, 470
PagI TCATGA 1 cut(s) 270
PfeI GAWTC 3 cut(s) 274, 317, 407
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 334, 532
PspPI GGNCC 1 cut(s) 401
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 2 cut(s) 380, 404
RsaI GTAC 3 cut(s) 66, 156, 379
RsaNI GTAC 3 cut(s) 65, 155, 378
RseI CAYNNNNRTG 4 cut(s) 38, 300, 369, 500
SaqAI TTAA 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 535
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 4 cut(s) 38, 300, 369, 500
Sse9I AATT 4 cut(s) 126, 172, 349, 513
SsiI CCGC 1 cut(s) 282
SspMI CTAG 2 cut(s) 27, 447
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 5 cut(s) 146, 166, 382, 423, 539
TaqI TCGA 1 cut(s) 320
TasI AATT 4 cut(s) 126, 172, 349, 513
TfiI GAWTC 3 cut(s) 274, 317, 407
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 417
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 239, 259, 284, 330
TspRI CASTG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 172, 349
XceI RCATGY 2 cut(s) 374, 470
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 27, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.