Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

34702965 .. 34703972

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGATATTGATATTGAGGAACAGCGCTTAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATTGATATATGGTGGCACTTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATTGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

97

Amino Acids

10.53

Weight (kDa)

6.49

Isoelectric Point (pI)

11.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	23 - 94	1.2e-19	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AciI	CCGC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	116, 193
AlwNI	CAGNNNCTG	2 cut(s)	218, 242
Aor51HI	AGCGCT	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	149, 241, 262
AvaII	GGWCC	1 cut(s)	239
BccI	CCATC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	73
BspACI	CCGC	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	220, 261
BstDEI	CTNAG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	203
CaiI	CAGNNNCTG	2 cut(s)	218, 242
CciI	TCATGA	1 cut(s)	108
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	109, 134, 209
CviJI	RGCY	1 cut(s)	284
CviKI_1	RGCY	1 cut(s)	284
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	239
Eco47III	AGCGCT	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	3 cut(s)	112, 137, 212
FaiI	YATR	9 cut(s)	72, 110, 135, 153, 163, 165, 210, 227, 292
FatI	CATG	3 cut(s)	108, 133, 208
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	28
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	112, 137, 212
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	112, 245
HphI	GGTGA	3 cut(s)	149, 241, 262
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	220, 261
HpyCH4V	TGCA	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	112, 137, 212
HspAI	GCGC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	87, 198, 222, 255
MaeI	CTAG	1 cut(s)	285
MfeI	CAATTG	1 cut(s)	250
MluCI	AATT	3 cut(s)	155, 187, 250
MnlI	CCTC	1 cut(s)	10
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	2 cut(s)	138, 207
MunI	CAATTG	1 cut(s)	250
NlaIII	CATG	3 cut(s)	112, 137, 212
NspI	RCATGY	1 cut(s)	212
PagI	TCATGA	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	112, 245
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
PstNI	CAGNNNCTG	2 cut(s)	218, 242
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	138, 207
SaqAI	TTAA	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	239
SetI	ASST	4 cut(s)	43, 49, 217, 244
SgeI	CNNG	8 cut(s)	114, 121, 128, 146, 221, 225, 249, 254
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	138, 207
Sse9I	AATT	3 cut(s)	155, 187, 250
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	220, 261
TasI	AATT	3 cut(s)	155, 187, 250
TfiI	GAWTC	2 cut(s)	112, 245
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	77, 97, 122, 168, 279
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.