Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407487.1

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1316

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

tattactacttttcatttgcaggtagaattgtgattggattatacggtcaggttgtaccaaaaactgttgaaaatttcagggcattgtgcacaggagaaaaaggtaaaggtgttaagggaaaaaaactccactataagggaacgccatttcatcgtatcgtatctgggttcatgattcaaggcggagatatcattcatggtgatgggaagggatatgaatcgatatatggtggcacctttgctgatgagaatttcaaagtgaaacattcacatgcaggtactgtttctatggtgaatacaggacctgattccaatgggtcacagttctttatcaccacaatcaaggctagttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

117

Amino Acids

12.72

Weight (kDa)

9.49

Isoelectric Point (pI)

4.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	11, 266
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	73, 250
AfaI	GTAC	2 cut(s)	57, 280
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	71, 179, 256
Alw21I	GWGCWC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	88
AlwNI	CAGNNNCTG	2 cut(s)	281, 305
ApaLI	GTGCAC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	73, 250
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	212, 304, 325
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	92
BccI	CCATC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	348
BfuAI	ACCTGC	2 cut(s)	11, 266
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	235
BspMI	ACCTGC	2 cut(s)	11, 266
BspT107I	GGYRCC	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	47, 67, 283, 324
BstNSI	RCATGY	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	221
BveI	ACCTGC	2 cut(s)	11, 266
CaiI	CAGNNNCTG	2 cut(s)	281, 305
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	56, 279
CviAII	CATG	3 cut(s)	172, 197, 272
CviJI	RGCY	1 cut(s)	347
CviKI_1	RGCY	1 cut(s)	347
CviQI	GTAC	2 cut(s)	56, 279
EciI	GGCGGA	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	3 cut(s)	175, 200, 275
FaiI	YATR	9 cut(s)	43, 135, 173, 198, 216, 226, 228, 273, 290
FatI	CATG	3 cut(s)	171, 196, 271
FspBI	CTAG	1 cut(s)	348
Hin1II	CATG	3 cut(s)	175, 200, 275
HinfI	GANTC	3 cut(s)	175, 218, 308
HphI	GGTGA	3 cut(s)	212, 304, 325
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	4 cut(s)	47, 67, 283, 324
HpyCH4V	TGCA	3 cut(s)	20, 90, 275
Hsp92II	CATG	3 cut(s)	175, 200, 275
LpnPI	CCDG	8 cut(s)	6, 35, 64, 78, 150, 261, 285, 318
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	3 cut(s)	27, 73, 250
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	201, 270
NlaIII	CATG	3 cut(s)	175, 200, 275
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	318
NspI	RCATGY	1 cut(s)	275
PagI	TCATGA	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	175, 218, 308
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	281, 305
RsaI	GTAC	2 cut(s)	57, 280
RsaNI	GTAC	2 cut(s)	56, 279
RseI	CAYNNNNRTG	2 cut(s)	201, 270
SaqAI	TTAA	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	25, 54, 106, 112, 239, 280, 307
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	201, 270
Sse9I	AATT	3 cut(s)	27, 73, 250
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	47, 67, 283, 324
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	27, 73, 250
TfiI	GAWTC	3 cut(s)	175, 218, 308
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	318
TspDTI	ATGAA	4 cut(s)	140, 160, 185, 231
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	73, 250
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.