Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

1330389 .. 1333792

Gene Structure 3404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCTCCTCCTCGAGCCATCTCCGTTCTGCTTCAGCCCCGATCCCTCCTCCTCTTCACCGTCCTCACTATTTTCCTTATCTTCGTTTTCACTTCCACCCATCAAAAGGAGGAAGAGAAAGTAGAAGAAGCACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCGCTTAGGTAGAATTGTGATTGGATTGTATGGTCAGGTCGTTCCAAAAACTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAAGGGAAAACTACTCCACTACAAGGGGACGCCATTTCATCGTATTGTATCTGGGTTTATGATTCAAGGTGGAGATATCATTCACGGTGATGGGAAGGGATATGAATCCATATATGGTGGCACCTTTGCTGACGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGACTCCAATGGCTCGCAGTTCTTTATCACCACAATCAAGGCTAGTTGGTTGGATGGGGAGCACGTCGTCTTCGGCAAGGTTATCCAGGGCATGGACATGGTGTATGCAATTGAAGGAGGGGCTGGTACCTACAGCGGAAAACCCAGAAAGAAGGTTGTTATTGCTGACTCAGGAGAGATCCCCAAAGACAAGTGGGATGAGGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

227

Amino Acids

25.01

Weight (kDa)

6.72

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	55 - 213	3.5e-47	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	398, 596
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	36, 643
AcsI	RAATTY	2 cut(s)	238, 415
AcuI	CTGAAG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	2 cut(s)	445, 598
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	106, 301, 562
AgsI	TTSAA	4 cut(s)	236, 344, 421, 584
AjiI	CACGTC	1 cut(s)	535
AjnI	CCWGG	2 cut(s)	156, 555
Alw21I	GWGCWC	2 cut(s)	257, 534
Alw44I	GTGCAC	1 cut(s)	253
AlwI	GGATC	2 cut(s)	36, 643
AlwNI	CAGNNNCTG	2 cut(s)	446, 470
Ama87I	CYCGRG	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	238, 415
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	4 cut(s)	49, 377, 469, 490
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	398, 596
BbsI	GAAGAC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	257, 534
BccI	CCATC	4 cut(s)	26, 108, 362, 518
BciT130I	CCWGG	2 cut(s)	158, 557
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	158, 557
Bme18I	GGWCC	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	400, 598
BmrFI	CCNGG	2 cut(s)	158, 557
BpiI	GAAGAC	1 cut(s)	532
Bpu10I	CCTNAGC	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 301, 562
Bse8I	GATNNNNATC	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	158, 557
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	529, 673
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	106, 301, 562
BseMII	CTCAG	1 cut(s)	654
BseRI	GAGGAG	2 cut(s)	38, 41
BseSI	GKGCMC	1 cut(s)	257
BshNI	GGYRCC	2 cut(s)	398, 596
BsiHKAI	GWGCWC	2 cut(s)	257, 534
BsiHKCI	CYCGRG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	106, 301, 562
BsmFI	GGGAC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	257, 534
Bsp143I	GATC	2 cut(s)	41, 648
BspACI	CCGC	1 cut(s)	606
BspCNI	CTCAG	1 cut(s)	653
BspLI	GGNNCC	2 cut(s)	400, 598
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	36, 643
BspT107I	GGYRCC	2 cut(s)	398, 596
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	2 cut(s)	41, 648
BssNAI	GTATAC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	154
Bst2UI	CCWGG	2 cut(s)	158, 557
Bst4CI	ACNGT	4 cut(s)	61, 232, 365, 448
Bst6I	CTCTTC	2 cut(s)	59, 108
BstACI	GRCGYC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	184, 640
BstF5I	GGATG	2 cut(s)	529, 673
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	44, 651
BstMBI	GATC	2 cut(s)	41, 648
BstNI	CCWGG	2 cut(s)	158, 557
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	156, 555
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BstZ17I	GTATAC	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	529, 673
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	485
CaiI	CAGNNNCTG	2 cut(s)	446, 470
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	444, 597
CviAII	CATG	3 cut(s)	437, 562, 568
CviJI	RGCY	5 cut(s)	17, 37, 483, 512, 593
CviKI_1	RGCY	5 cut(s)	17, 37, 483, 512, 593
CviQI	GTAC	2 cut(s)	444, 597
DdeI	CTNAG	2 cut(s)	184, 640
DpnI	GATC	2 cut(s)	43, 650
DpnII	GATC	2 cut(s)	41, 648
Eam1104I	CTCTTC	2 cut(s)	59, 108
EarI	CTCTTC	2 cut(s)	59, 108
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	467
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	156, 555
EcoRV	GATATC	1 cut(s)	355
FaeI	CATG	3 cut(s)	440, 565, 571
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	436, 561, 567
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	1 cut(s)	536
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	184
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	440, 565, 571
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	340, 383, 473, 638
HphI	GGTGA	4 cut(s)	49, 377, 469, 490
Hpy166II	GTNNAC	2 cut(s)	154, 255
Hpy188III	TCNNGA	1 cut(s)	642
Hpy8I	GTNNAC	2 cut(s)	154, 255
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	367, 578, 616
HpyCH4III	ACNGT	4 cut(s)	61, 232, 365, 448
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	3 cut(s)	255, 440, 578
HpyF3I	CTNAG	2 cut(s)	184, 640
HpySE526I	ACGT	1 cut(s)	534
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	440, 565, 571
HspAI	GCGC	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	41, 648
LmnI	GCTCC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	534
MalI	GATC	2 cut(s)	43, 650
MboI	GATC	2 cut(s)	41, 648
MboII	GAAGA	5 cut(s)	46, 73, 125, 137, 532
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	2 cut(s)	257, 534
MluCI	AATT	4 cut(s)	192, 238, 415, 579
MlyI	GAGTC	2 cut(s)	467, 632
MmeI	TCCRAC	1 cut(s)	501
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	3 cut(s)	366, 435, 566
MspA1I	CMGCKG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	158, 557
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	158, 557
NdeII	GATC	2 cut(s)	41, 648
NlaIII	CATG	3 cut(s)	440, 565, 571
NlaIV	GGNNCC	2 cut(s)	400, 598
NspI	RCATGY	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	340, 383
PflMI	CCANNNNNTGG	1 cut(s)	562
PleI	GAGTC	2 cut(s)	467, 632
PpsI	GAGTC	2 cut(s)	467, 632
PpuMI	RGGWCCY	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	156, 555
PspGI	CCWGG	2 cut(s)	156, 555
PspN4I	GGNNCC	2 cut(s)	400, 598
PspPI	GGNCC	1 cut(s)	467
PspPPI	RGGWCCY	1 cut(s)	467
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	2 cut(s)	446, 470
PsuI	RGATCY	1 cut(s)	648
RsaI	GTAC	2 cut(s)	445, 598
RsaNI	GTAC	2 cut(s)	444, 597
RseI	CAYNNNNRTG	3 cut(s)	366, 435, 566
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	41, 648
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	2 cut(s)	467, 632
ScrFI	CCNGG	2 cut(s)	158, 557
SduI	GDGCHC	2 cut(s)	257, 534
SfcI	CTRYAG	1 cut(s)	601
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	3 cut(s)	366, 435, 566
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	4 cut(s)	192, 238, 415, 579
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	156, 555
TaaI	ACNGT	4 cut(s)	61, 232, 365, 448
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	13
TasI	AATT	4 cut(s)	192, 238, 415, 579
TfiI	GAWTC	2 cut(s)	340, 383
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	305, 396
TspGWI	ACGGA	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	562
VneI	GTGCAC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	2 cut(s)	238, 415
XceI	RCATGY	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.