RLG00000008569

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003574
Physical Location & Seq
Forward (+)
32271687 .. 32274375
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008569

Sequence Viewer

Length: 477 bp
ATGGCCTCCTTTATCTCCCTCATCATCGACTTCGAACCGGGACGACTCCTCACCCGAGGACGTTGCTGTTTTGTCCTCCACCAAGGCTTTTGCGCAGGATGCCTACCCAAGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCGCTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTGTTGGAGAAAAAGGTAAAGGTGTTAATAGAAAACCACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATTTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGAAATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAGCATTCACATACAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTTGTAA

Protein Analysis

159

Amino Acids

17.6

Weight (kDa)

7.72

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 56 - 155 1.1e-17 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 156
AciI CCGC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 2 cut(s) 135, 225
AfeI AGCGCT 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 109, 280
AgsI TTSAA 2 cut(s) 323, 400
AjnI CCWGG 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 54
Aor51HI AGCGCT 1 cut(s) 185
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 394
AspLEI GCGC 2 cut(s) 95, 186
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 3 cut(s) 43, 356, 445
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 54
AvaII GGWCC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 377
BccI CCATC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 39, 161
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 39, 161
BmsI GCATC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 55, 82, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 280
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 55, 82, 108
BseGI GGATG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 109, 280
BseRI GAGGAG 1 cut(s) 38
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 109, 280
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 54
Bsp119I TTCGAA 1 cut(s) 33
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 379
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 55, 82, 108
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 82, 108
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 215, 235, 444
Bst6I CTCTTC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 187
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 95, 186
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 37, 159
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 104
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 1 cut(s) 315
CfoI GCGC 2 cut(s) 95, 186
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 134, 224
CviAII CATG 2 cut(s) 316, 341
CviJI RGCY 4 cut(s) 5, 87, 438, 467
CviKI_1 RGCY 4 cut(s) 5, 87, 438, 467
CviQI GTAC 2 cut(s) 134, 224
DdeI CTNAG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 82, 108
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 422
Eco47III AGCGCT 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 82, 108
ErhI CCWWGG 2 cut(s) 82, 108
FaeI CATG 2 cut(s) 319, 344
FaiI YATR 9 cut(s) 150, 157, 211, 279, 317, 342, 360, 372, 417
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 315, 340
FblI GTMKAC 1 cut(s) 156
FokI GGATG 1 cut(s) 111
FspBI CTAG 1 cut(s) 468
FspI TGCGCA 1 cut(s) 94
GlaI GCGC 2 cut(s) 94, 185
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 95, 186
Hin1II CATG 2 cut(s) 319, 344
Hin6I GCGC 2 cut(s) 93, 184
HinP1I GCGC 2 cut(s) 93, 184
HinfI GANTC 4 cut(s) 45, 319, 362, 428
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 43, 356, 445
Hpy166II GTNNAC 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 215, 235, 444
HpyCH4IV ACGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 2 cut(s) 319, 344
HspAI GCGC 2 cut(s) 93, 184
LpnPI CCDG 8 cut(s) 51, 81, 146, 150, 173, 203, 405, 438
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 61
MboII GAAGA 2 cut(s) 128, 140
MluCI AATT 2 cut(s) 195, 394
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 7 cut(s) 16, 29, 50, 59, 86, 106, 169
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 39, 161
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 39
NlaIII CATG 2 cut(s) 319, 344
NlaIV GGNNCC 1 cut(s) 379
NsbI TGCGCA 1 cut(s) 94
NspV TTCGAA 1 cut(s) 33
PagI TCATGA 1 cut(s) 315
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 319, 362, 428
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 422
PspPPI RGGWCCY 1 cut(s) 422
PstNI CAGNNNCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 135, 225
RsaNI GTAC 2 cut(s) 134, 224
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 39, 161
SetI ASST 9 cut(s) 64, 139, 162, 193, 222, 250, 256, 383, 427
SfaNI GCATC 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 195, 394
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 2 cut(s) 37, 159
StyI CCWWGG 2 cut(s) 82, 108
TaaI ACNGT 3 cut(s) 215, 235, 444
TaiI ACGT 1 cut(s) 64
TaqI TCGA 3 cut(s) 27, 33, 365
TasI AATT 2 cut(s) 195, 394
TfiI GAWTC 3 cut(s) 319, 362, 428
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TspDTI ATGAA 4 cut(s) 284, 304, 329, 375
VpaK11BI GGWCC 1 cut(s) 422
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.