Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

41789707 .. 41791132

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCCTTACGAAAATTATTTCTCTGTTGAAGAGAGATGTTCAGGCAAAGTCCTTGAATATTTAGTCTTACTTTTTATCTTTCTCACAGTTTTTGTCAAATATGAAATTGAGGAAGAGAAAGTAGAAGGAGTACTTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAACGCTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAAATGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAAGTGTTAATGGAAAACTACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTTATGAGAATTTGAAAGTGAAACATTCACATGCAGGTACTATTTCTATAGTGAATACAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCGTGTTTTTTGGTGCCTTGTGGATCTGTTACTTTTCTTTTGCCTCTATATTCTTTGGAAAGTGATAAAATGAACAAAACAAAGTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

202

Amino Acids

22.65

Weight (kDa)

6.31

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	55 - 171	1.3e-28	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	238, 415
AfaI	GTAC	3 cut(s)	132, 222, 445
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	6 cut(s)	29, 56, 137, 236, 344, 421
AjnI	CCWGG	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	238, 415
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	377, 490
AvaII	GGWCC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	257
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	431
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	386
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	529
BshVI	ATCGAT	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	539
BspACI	CCGC	1 cut(s)	348
BspDI	ATCGAT	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	531
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	529
BssMI	GATC	1 cut(s)	539
BssNAI	GTATAC	1 cut(s)	154
Bst1107I	GTATAC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	88, 212, 489
Bst6I	CTCTTC	2 cut(s)	24, 108
BstDEI	CTNAG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BstZ17I	GTATAC	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	386
BveI	ACCTGC	1 cut(s)	431
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	131, 221, 444
CviAII	CATG	3 cut(s)	337, 362, 437
CviJI	RGCY	2 cut(s)	483, 512
CviKI_1	RGCY	2 cut(s)	483, 512
CviQI	GTAC	3 cut(s)	131, 221, 444
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	541
DpnII	GATC	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	24, 108
EarI	CTCTTC	2 cut(s)	24, 108
EciI	GGCGGA	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	355
FaeI	CATG	3 cut(s)	340, 365, 440
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	336, 361, 436
FblI	GTMKAC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	513
Hin1II	CATG	3 cut(s)	340, 365, 440
HinfI	GANTC	3 cut(s)	340, 383, 473
HphI	GGTGA	2 cut(s)	377, 490
Hpy166II	GTNNAC	2 cut(s)	154, 255
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	2 cut(s)	154, 255
HpyAV	CCTTC	2 cut(s)	119, 367
HpyCH4III	ACNGT	3 cut(s)	88, 212, 489
HpyCH4V	TGCA	2 cut(s)	255, 440
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	340, 365, 440
Kzo9I	GATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	1 cut(s)	541
MboI	GATC	1 cut(s)	539
MboII	GAAGA	2 cut(s)	41, 125
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	5 cut(s)	13, 105, 192, 238, 415
MnlI	CCTC	3 cut(s)	103, 166, 570
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	366, 435
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NdeII	GATC	1 cut(s)	539
NlaIII	CATG	3 cut(s)	340, 365, 440
NlaIV	GGNNCC	1 cut(s)	531
NspI	RCATGY	1 cut(s)	440
PagI	TCATGA	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	340, 383, 473
PpuMI	RGGWCCY	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	467
PspPPI	RGGWCCY	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	3 cut(s)	132, 222, 445
RsaNI	GTAC	3 cut(s)	131, 221, 444
RseI	CAYNNNNRTG	2 cut(s)	366, 435
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	539
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	6 cut(s)	159, 190, 219, 271, 445, 472
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	2 cut(s)	366, 435
Sse9I	AATT	5 cut(s)	13, 105, 192, 238, 415
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	59
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	88, 212, 489
TaqI	TCGA	1 cut(s)	386
TasI	AATT	5 cut(s)	13, 105, 192, 238, 415
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	340, 383, 473
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TspDTI	ATGAA	6 cut(s)	117, 305, 325, 350, 396, 602
VneI	GTGCAC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	2 cut(s)	238, 415
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	513
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.