Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

15993842 .. 15999471

Gene Structure 5630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCACCATAGATGGAAGGAGAATGCTCGCTGTGCAGAGATGGCGGCACTGTGTTACCACACTTCAGCCTCTCAAAACACTCTTAATCACTCGTACCAAATCGCCGTCGAAAATCTCGAGCAAATAATCCACACCCTCGCCGCCGCCGACCTCTCGGTCCTCCTCAACTGCCTCTACGATGCCTTCGCCGACCCCAAACCCGCCGTCGAGAAAAAGTCTTTGAGTCCACGCCAATTTCACATCCATCCATCTCATCAAAGGCTCAAGAACGCCGACTCCGACGTGGGGGACGGTGTCACGACGCCATTGGGGAAATCTCAAAGCTTTACATACAGAAGAGAGATTGGATTGTATATGTGGAAGATCTTAGCAACAGGTAGATTTTCTTTCATAGCACTGCAGTCGAAGAGTTATCCCATTCAGCAGGGTGGTGACTACGCTGAGAGCTTGAAGGAGTTCAGTGCCAATAACATTAAGGACACCTTCAGAGTTATGCTTGAGATGGGTGTGGTTCTTATGTTCGGAGGACAAATGAATATTGTCAAGGTGGGAAGAATGGTGGATTGGGTCAGACGGGCATGGCAGCCCTCTGAAGATCAGTTCTTGTCTGTCACACCAGTTTGGATGTTGTGGTCTTCATGCGCACTTTCATCTTCAGGTTATTTGAGGGTGTTTGGCTGCGTGTTATATCAGTTCTTTTGGTTGACCAGCTCCATCTTGGTGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTGTACCTGGATATTGTTATTGAGGAACAGGGCTTAGGTAGAATTGTGATTGGATTATACAGTCAGGTTGTACCAAAAACTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGTGGAGATGGGAAGGGATATGAATTGATATATGGTGGCACTTTTGCTGATGAGAATTTCAAAGTGAAACATTCACACGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAATTCTTTATCACCACAATCAAGGTAAAATATGGTATATCATTTTCCCCAGGAAGCCAACATGAATCTAAAATACTAACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

391

Amino Acids

43.67

Weight (kDa)

8.11

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	140 - 186	9.3e-12	Class-II DAHP synthetase family
Pro_isomerase	PF00160	262 - 368	1.2e-29	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	1031
AciI	CCGC	4 cut(s)	44, 141, 144, 201
AcsI	RAATTY	2 cut(s)	853, 1015
AcuI	CTGAAG	4 cut(s)	48, 469, 612, 639
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	5 cut(s)	95, 747, 770, 837, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	285, 916
AgsI	TTSAA	4 cut(s)	451, 851, 959, 1021
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	771, 1135
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	3 cut(s)	324, 447, 711
AluI	AGCT	3 cut(s)	324, 447, 711
Alw21I	GWGCWC	1 cut(s)	872
Alw44I	GTGCAC	1 cut(s)	868
AlwNI	CAGNNNCTG	2 cut(s)	1046, 1070
Ama87I	CYCGRG	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	868
ApeKI	GCWGC	2 cut(s)	583, 678
ApoI	RAATTY	2 cut(s)	853, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	2 cut(s)	157, 1067
AsuHPI	GGTGA	3 cut(s)	443, 1069, 1090
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	157, 1067
BaeGI	GKGCMC	1 cut(s)	872
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	872
BbvI	GCAGC	2 cut(s)	595, 665
BccI	CCATC	7 cut(s)	6, 34, 252, 256, 496, 722, 962
BceAI	ACGGC	2 cut(s)	89, 188
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	2 cut(s)	773, 1137
BfmI	CTRYAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	1031
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	5 cut(s)	45, 141, 144, 584, 679
BlsI	GCNGC	5 cut(s)	46, 142, 145, 585, 680
Bme1390I	CCNGG	2 cut(s)	773, 1137
Bme18I	GGWCC	2 cut(s)	157, 1067
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	157, 1067
BmrFI	CCNGG	2 cut(s)	773, 1137
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	799
BpuEI	CTTGAG	2 cut(s)	248, 518
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	1135
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 916
Bse1I	ACTGG	2 cut(s)	617, 1171
BseBI	CCWGG	2 cut(s)	773, 1137
BseDI	CCNNGG	1 cut(s)	1135
BseGI	GGATG	3 cut(s)	240, 244, 630
BseLI	CCNNNNNNNGG	2 cut(s)	285, 916
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	617, 1171
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	2 cut(s)	595, 665
BsgI	GTGCAG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	872
BsiHKCI	CYCGRG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	285, 916
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	2 cut(s)	363, 595
BspACI	CCGC	4 cut(s)	44, 141, 144, 201
BspCNI	CTCAG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	951
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	1031
BsrI	ACTGG	2 cut(s)	617, 1171
BssECI	CCNNGG	1 cut(s)	1135
BssMI	GATC	2 cut(s)	363, 595
BssNI	GRCGYC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	773, 1137
Bst4CI	ACNGT	5 cut(s)	51, 293, 827, 847, 1048
Bst6I	CTCTTC	3 cut(s)	331, 401, 723
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	367, 441, 799
BstF5I	GGATG	3 cut(s)	240, 244, 630
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	2 cut(s)	366, 598
BstMBI	GATC	2 cut(s)	363, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 41
BstNI	CCWGG	2 cut(s)	773, 1137
BstSCI	CCNGG	2 cut(s)	771, 1135
BstSFI	CTRYAG	1 cut(s)	398
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	2 cut(s)	595, 665
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	240, 244, 630
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	47, 395, 466
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	2 cut(s)	1046, 1070
CciI	TCATGA	1 cut(s)	951
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	157, 1067
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	5 cut(s)	94, 746, 769, 836, 1044
CviAII	CATG	4 cut(s)	579, 639, 952, 1148
CviQI	GTAC	5 cut(s)	94, 746, 769, 836, 1044
DdeI	CTNAG	3 cut(s)	367, 441, 799
DpnI	GATC	2 cut(s)	365, 597
DpnII	GATC	2 cut(s)	363, 595
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	3 cut(s)	331, 401, 723
EarI	CTCTTC	3 cut(s)	331, 401, 723
Eco47I	GGWCC	2 cut(s)	157, 1067
Eco57I	CTGAAG	4 cut(s)	48, 469, 612, 639
Eco88I	CYCGRG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	771, 1135
FaeI	CATG	4 cut(s)	582, 642, 955, 1151
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	4 cut(s)	578, 638, 951, 1147
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	45, 141, 144, 584, 679
FokI	GGATG	3 cut(s)	227, 231, 637
Fsp4HI	GCNGC	5 cut(s)	45, 141, 144, 584, 679
FspAI	RTGCGCAY	1 cut(s)	643
FspI	TGCGCA	1 cut(s)	643
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	5 cut(s)	45, 141, 144, 584, 679
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	4 cut(s)	582, 642, 955, 1151
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	5 cut(s)	223, 275, 955, 1073, 1151
HphI	GGTGA	3 cut(s)	443, 1069, 1090
Hpy166II	GTNNAC	4 cut(s)	227, 705, 769, 870
Hpy188I	TCNGA	5 cut(s)	280, 488, 524, 572, 592
Hpy188III	TCNNGA	5 cut(s)	116, 208, 265, 298, 952
Hpy8I	GTNNAC	4 cut(s)	227, 705, 769, 870
Hpy99I	CGWCG	4 cut(s)	110, 209, 284, 304
HpyAV	CCTTC	5 cut(s)	10, 193, 445, 493, 967
HpyCH4III	ACNGT	5 cut(s)	51, 293, 827, 847, 1048
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	4, 35, 400, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 41
HpyF3I	CTNAG	3 cut(s)	367, 441, 799
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	4 cut(s)	582, 642, 955, 1151
HspAI	GCGC	1 cut(s)	642
Kzo9I	GATC	2 cut(s)	363, 595
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	2 cut(s)	595, 665
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	53, 295, 431, 610
MalI	GATC	2 cut(s)	365, 597
MboI	GATC	2 cut(s)	363, 595
MboII	GAAGA	9 cut(s)	348, 373, 418, 564, 605, 627, 645, 740, 752
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	6 cut(s)	233, 807, 853, 983, 1015, 1088
MlyI	GAGTC	2 cut(s)	232, 269
MmeI	TCCRAC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	3 cut(s)	84, 474, 894
MslI	CAYNNNNRTG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	773, 1137
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	2 cut(s)	773, 1137
MwoI	GCNNNNNNNGC	2 cut(s)	32, 41
NdeII	GATC	2 cut(s)	363, 595
NlaIII	CATG	4 cut(s)	582, 642, 955, 1151
NmuCI	GTSAC	3 cut(s)	295, 431, 610
NsbI	TGCGCA	1 cut(s)	643
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 144, 276
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	3 cut(s)	955, 1073, 1151
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	5 cut(s)	46, 142, 145, 585, 680
PleI	GAGTC	2 cut(s)	231, 269
PpsI	GAGTC	2 cut(s)	231, 269
PpuMI	RGGWCCY	1 cut(s)	1067
Psp5II	RGGWCCY	1 cut(s)	1067
Psp6I	CCWGG	2 cut(s)	771, 1135
PspGI	CCWGG	2 cut(s)	771, 1135
PspPI	GGNCC	2 cut(s)	157, 1067
PspPPI	RGGWCCY	1 cut(s)	1067
PstI	CTGCAG	1 cut(s)	402
PstNI	CAGNNNCTG	2 cut(s)	1046, 1070
PsuI	RGATCY	1 cut(s)	363
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	5 cut(s)	95, 747, 770, 837, 1045
RsaNI	GTAC	5 cut(s)	94, 746, 769, 836, 1044
RseI	CAYNNNNRTG	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	84, 474, 894
SatI	GCNGC	5 cut(s)	45, 141, 144, 584, 679
Sau3AI	GATC	2 cut(s)	363, 595
Sau96I	GGNCC	2 cut(s)	157, 1067
SchI	GAGTC	2 cut(s)	232, 269
ScrFI	CCNGG	2 cut(s)	773, 1137
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	398
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	157, 1067
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	3 cut(s)	116, 263, 497
SmoI	CTYRAG	3 cut(s)	116, 263, 497
Sse9I	AATT	6 cut(s)	233, 807, 853, 983, 1015, 1088
SsiI	CCGC	4 cut(s)	44, 141, 144, 201
SspI	AATATT	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	771, 1135
TaaI	ACNGT	5 cut(s)	51, 293, 827, 847, 1048
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	108, 117, 207, 404
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	6 cut(s)	233, 807, 853, 983, 1015, 1088
TauI	GCSGC	3 cut(s)	47, 143, 146
TfiI	GAWTC	3 cut(s)	955, 1073, 1151
Tru1I	TTAA	3 cut(s)	84, 474, 894
Tru9I	TTAA	3 cut(s)	84, 474, 894
TscAI	CASTG	3 cut(s)	54, 402, 466
TseFI	GTSAC	3 cut(s)	295, 431, 610
TseI	GCWGC	2 cut(s)	583, 678
Tsp45I	GTSAC	3 cut(s)	295, 431, 610
TspDTI	ATGAA	8 cut(s)	379, 548, 627, 639, 920, 940, 996, 1164
TspRI	CASTG	3 cut(s)	54, 402, 466
Tth111I	GACNNNGTC	1 cut(s)	293
VneI	GTGCAC	1 cut(s)	868
VpaK11BI	GGWCC	2 cut(s)	157, 1067
XapI	RAATTY	2 cut(s)	853, 1015
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XhoI	CTCGAG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.