Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

69275107 .. 69277686

Gene Structure 2580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG498000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTAGAACGACGTCGTTGCTGCTCTGTACTCTGGTCCTCTTCGGAGCCCTAGCTCTAATTGAGGCAAAGAAATCCAAGGAGGATCTGAAGGAAGTGACCTCCAAGGTTTACTTCGATGTTGAAATTGCTGGGAAGCCTGCTGGTCGTATTGTCATGGGTCTCTTCGGGAAGGCTGTTCCTAAGACGGCAGAAAATTTCCGAGCTCTTTGCACAGGGGAGAAAGGCATTGGAAAGAGTGGAAAACCTCTCCATTACAAGGGTAGCAAATTCCACAGGATTATTCCCAGCTTCATGCTTCAGGGAGGTGATTTCACTCTCGGTGATGGAAGAGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGCTGAAGCATACTGGACCAGGGCTTTTGTCAATGGCAAATGCTGGTCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

159

Amino Acids

17.08

Weight (kDa)

9.37

Isoelectric Point (pI)

12.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	38 - 158	1.1e-32	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	196, 269, 373
AcuI	CTGAAG	3 cut(s)	110, 284, 404
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	125, 379
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	5 cut(s)	56, 206, 291, 382, 474
AluI	AGCT	5 cut(s)	56, 206, 291, 382, 474
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	3 cut(s)	196, 269, 373
AspS9I	GGNCC	3 cut(s)	37, 395, 425
AsuHPI	GGTGA	3 cut(s)	320, 335, 448
AvaII	GGWCC	3 cut(s)	37, 395, 425
BanII	GRGCYC	2 cut(s)	52, 208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	204
BcgI	CGANNNNNNTGC	3 cut(s)	35, 192, 226
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	3 cut(s)	6, 53, 471
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	3 cut(s)	37, 395, 425
BmgT120I	GGNCC	3 cut(s)	37, 395, 425
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	78, 105, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	78, 105, 398
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	9
BseYI	CCCAGC	2 cut(s)	131, 287
BsiHKAI	GWGCWC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	52, 208
Bsp143I	GATC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	78, 105, 398
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	78, 105
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	3 cut(s)	47, 170, 325
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	37, 395, 425
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	157, 295
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	3 cut(s)	47, 170, 325
EarI	CTCTTC	3 cut(s)	47, 170, 325
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	78, 105
Eco24I	GRGCYC	2 cut(s)	52, 208
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	3 cut(s)	37, 395, 425
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	3 cut(s)	110, 284, 404
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	78, 105
EcoT38I	GRGCYC	2 cut(s)	52, 208
ErhI	CCWWGG	2 cut(s)	78, 105
FaeI	CATG	2 cut(s)	160, 298
FaiI	YATR	4 cut(s)	158, 296, 351, 390
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	2 cut(s)	156, 294
Fnu4HI	GCNGC	1 cut(s)	23
FriOI	GRGCYC	2 cut(s)	52, 208
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	3 cut(s)	6, 53, 471
GluI	GCNGC	1 cut(s)	23
GsaI	CCCAGC	2 cut(s)	135, 291
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	160, 298
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	3 cut(s)	320, 335, 448
Hpy166II	GTNNAC	2 cut(s)	112, 443
Hpy188I	TCNGA	3 cut(s)	47, 90, 203
Hpy188III	TCNNGA	2 cut(s)	169, 428
Hpy8I	GTNNAC	2 cut(s)	112, 443
Hpy99I	CGWCG	2 cut(s)	16, 19
HpyAV	CCTTC	2 cut(s)	85, 166
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	160, 298
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	9
MaeI	CTAG	3 cut(s)	6, 53, 471
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	97, 463
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	34, 157, 342, 442
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	52, 208
MluCI	AATT	7 cut(s)	60, 126, 196, 269, 345, 373, 446
MnlI	CCTC	7 cut(s)	50, 58, 76, 112, 258, 299, 326
MslI	CAYNNNNRTG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	160, 298
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	97, 463
OliI	CACNNNNGTG	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	2 cut(s)	131, 287
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	37, 395, 425
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	208
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	3 cut(s)	37, 395, 425
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	52, 208
SinI	GGWCC	3 cut(s)	37, 395, 425
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	7 cut(s)	60, 126, 196, 269, 345, 373, 446
SspMI	CTAG	3 cut(s)	6, 53, 471
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	78, 105
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	117
TasI	AATT	7 cut(s)	60, 126, 196, 269, 345, 373, 446
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	341
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	97, 463
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	2 cut(s)	97, 463
TspDTI	ATGAA	2 cut(s)	283, 442
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	37, 395, 425
XapI	RAATTY	3 cut(s)	196, 269, 373
XspI	CTAG	3 cut(s)	6, 53, 471
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.