Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

28472319 .. 28473251

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTGTCATTATGCTTATTGAAACTTGCTTTAAATGCAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAATACCATTTCATCATATCGTATCTGGGTTCATGATTCAAGGCGGAGAAATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAAGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCAAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

100

Amino Acids

10.71

Weight (kDa)

9.13

Isoelectric Point (pI)

10.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	17 - 97	1.4e-18	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AciI	CCGC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	22, 125, 202
AlwNI	CAGNNNCTG	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	138
AsuHPI	GGTGA	3 cut(s)	158, 250, 271
BccI	CCATC	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	167
BseJI	GATNNNNATC	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	229, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	3 cut(s)	118, 143, 218
CviJI	RGCY	1 cut(s)	264
CviKI_1	RGCY	1 cut(s)	264
CviQI	GTAC	1 cut(s)	225
DraI	TTTAAA	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	144
FaeI	CATG	3 cut(s)	121, 146, 221
FatI	CATG	3 cut(s)	117, 142, 217
Hin1II	CATG	3 cut(s)	121, 146, 221
HinfI	GANTC	3 cut(s)	121, 164, 254
HphI	GGTGA	3 cut(s)	158, 250, 271
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	229, 270
HpyCH4V	TGCA	2 cut(s)	38, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	121, 146, 221
LpnPI	CCDG	4 cut(s)	24, 96, 207, 264
MluCI	AATT	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	32, 60
MslI	CAYNNNNRTG	2 cut(s)	147, 216
MwoI	GCNNNNNNNGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	121, 146, 221
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	121, 164, 254
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	2 cut(s)	147, 216
SaqAI	TTAA	2 cut(s)	32, 60
SetI	ASST	4 cut(s)	52, 58, 226, 253
SmiMI	CAYNNNNRTG	2 cut(s)	147, 216
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	229, 270
TaqI	TCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	121, 164, 254
Tru1I	TTAA	2 cut(s)	32, 60
Tru9I	TTAA	2 cut(s)	32, 60
TspDTI	ATGAA	4 cut(s)	86, 106, 131, 177
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.