Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

68991119 .. 68999492

Gene Structure 8374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0507400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATTTTTATTTTTGCAGAATTGGTTAGAGAGGTAGTGCTAGTTTGGTTCCTCTTTGACCCGCTTTCAGAACATGACAAGGCTTCCTTCTTTAACAATGACCTCCTAATTTTGGATGCCTTTGTGATTCATAAGAAATATGTTCCTTGTGTGTATTACAGGGGAAATGTAAAAGTGCAGAGGACGATTCCTTTTGTCTGGAACCTCGTCACATCCGGTTACATTGAACAATCAATATTTGGGGTTGTTGTAAGCACTCTTGGTCTTCTTTTTATAGGGAAGCTGCTTGAACCTGTCTGGGGTTCCAGGGAGTTCTTGAAGTTTATCTTTGTAGTTAACTTCCTAACTTCCATATGCATTTTCATCACTGCCATTGCACTGTACTACATTACAAGGAAGGAAACTTACCTATATATGCCTCTTTCTGGCTTCCATGGAGTCCTTTCAGGTTTTTTGGTGGGCATTAAGCAAATGATACCTGACCAAGAGTTGCCTTTATTGAAAATAAAAGCTAAGTGGTTACCATCTCTCTCACTACTGCTGTCCATTGCCATAAGCTTCTGGACAGCTGAGTCAGCAACATATCTTCCAATCTTGATATTTGGCACCTATATGAGCTGGATTTACCTTAGATACTGGCAGAGAAAACCAGAAACAAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAATTCTTGAGAGAGGAGTTTTCAGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

246

Amino Acids

28.59

Weight (kDa)

7.71

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1751	PF08551	61 - 157	8.8e-34	Eukaryotic integral membrane protein (DUF1751)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	605
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	665
AcsI	RAATTY	1 cut(s)	710
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	3 cut(s)	112, 299, 425
AgsI	TTSAA	4 cut(s)	227, 290, 319, 502
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	5 cut(s)	283, 512, 558, 569, 618
AluI	AGCT	5 cut(s)	283, 512, 558, 569, 618
AlwI	GGATC	1 cut(s)	665
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	605
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	307
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	307
BmiI	GGNNCC	4 cut(s)	50, 203, 304, 607
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	647, 736
BsaJI	CCNNGG	2 cut(s)	306, 433
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 299, 425
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	2 cut(s)	372, 546
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	306, 433
BseGI	GGATG	2 cut(s)	121, 212
BseLI	CCNNNNNNNGG	3 cut(s)	112, 299, 425
BseMI	GCAATG	2 cut(s)	372, 546
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	197
BshNI	GGYRCC	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	112, 299, 425
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	4 cut(s)	50, 203, 304, 607
BspPI	GGATC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	372, 546
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	306, 433
BssMI	GATC	1 cut(s)	670
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	513, 570, 629
BstDSI	CCRYGG	1 cut(s)	433
BstEII	GGTNACC	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	121, 212
BstKTI	GATC	1 cut(s)	673
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	121, 212
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 377
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	74, 434
CviJI	RGCY	7 cut(s)	83, 283, 429, 512, 558, 569, 618
CviKI_1	RGCY	7 cut(s)	83, 283, 429, 512, 558, 569, 618
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	513, 570, 629
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	571
DseDI	GACNNNNNNGTC	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	519
EcoO65I	GGTNACC	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	2 cut(s)	77, 437
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 311, 343
FatI	CATG	2 cut(s)	73, 433
FauI	CCCGC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	2 cut(s)	128, 199
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	1 cut(s)	284
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	2 cut(s)	77, 437
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	4 cut(s)	127, 187, 438, 572
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	5 cut(s)	199, 316, 562, 595, 715
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	97, 391
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	5 cut(s)	17, 178, 357, 377, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	3 cut(s)	513, 570, 629
Hsp92II	CATG	2 cut(s)	77, 437
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	670
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	208, 218, 519
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	4 cut(s)	257, 578, 692, 694
MluCI	AATT	3 cut(s)	20, 108, 710
MlyI	GAGTC	2 cut(s)	447, 581
MnlI	CCTC	7 cut(s)	25, 62, 113, 174, 215, 429, 715
Mph1103I	ATGCAT	1 cut(s)	359
MseI	TTAA	3 cut(s)	93, 336, 465
MslI	CAYNNNNRTG	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	433
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	1 cut(s)	670
NlaIII	CATG	2 cut(s)	77, 437
NlaIV	GGNNCC	4 cut(s)	50, 203, 304, 607
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	127, 187
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	446, 580
PpsI	GAGTC	2 cut(s)	446, 580
Psp6I	CCWGG	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	4 cut(s)	50, 203, 304, 607
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	3 cut(s)	93, 336, 465
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	2 cut(s)	447, 581
ScrFI	CCNGG	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	662, 715
SmoI	CTYRAG	2 cut(s)	662, 715
Sse9I	AATT	3 cut(s)	20, 108, 710
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	381
TasI	AATT	3 cut(s)	20, 108, 710
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	127, 187
Tru1I	TTAA	3 cut(s)	93, 336, 465
Tru9I	TTAA	3 cut(s)	93, 336, 465
TscAI	CASTG	2 cut(s)	373, 384
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	119, 352
TspRI	CASTG	2 cut(s)	373, 384
XapI	RAATTY	1 cut(s)	710
XspI	CTAG	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.