Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

35828586 .. 35830111

Gene Structure 1526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGGACTAGTAGTGTTAAAAGGGTATATTGAATATTTGAATTTAAGTTTGATTTTGAATTGGGTTTTATTTTATTTTTTATTTTGTGTGTTATACCTGGATATTGATATTGAGGAACAACGCTTAGGTACAGTTGTACCAAAAATTGTATTGATCTTATATCCTAATAATGTCTTTTCATCAGAATCTTATAAACCTATTTTATTTCGACTTTCAACTTGTCACAAACTTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACTACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGCAACTGTTTCTATGGTGAATACAGGACCTGATTCCAATTGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCTTGCAGGTATTTTTTGGTGCCTTGTGGATCTGTTACTTTTCTTTTGCCTCTATATTCTCAAGAAAGTGATAAAATGAACAAAACAAAGTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

179

Amino Acids

20.27

Weight (kDa)

8.7

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	74 - 120	4.8e-09	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	460
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	43, 241
AfaI	GTAC	2 cut(s)	133, 141
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	35, 43, 61, 219, 239, 347
AhlI	ACTAGT	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	478
AlwNI	CAGNNNCTG	1 cut(s)	395
ApaLI	GTGCAC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	43, 241
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	394, 415
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	260
BaeI	ACNNNNGTAYC	4 cut(s)	123, 123, 156, 156
BanI	GGYRCC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	10
BfaI	CTAG	2 cut(s)	11, 438
BfuAI	ACCTGC	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	156, 470
BspACI	CCGC	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	460
BssMI	GATC	2 cut(s)	156, 470
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	136, 373, 414
BstDEI	CTNAG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	159, 473
BstMBI	GATC	2 cut(s)	156, 470
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	395
CciI	TCATGA	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	132, 140
CviAII	CATG	2 cut(s)	340, 365
CviJI	RGCY	1 cut(s)	437
CviKI_1	RGCY	1 cut(s)	437
CviQI	GTAC	2 cut(s)	132, 140
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	158, 472
DpnII	GATC	2 cut(s)	156, 470
EciI	GGCGGA	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	358
FaeI	CATG	2 cut(s)	343, 368
FaiI	YATR	9 cut(s)	30, 97, 163, 195, 303, 341, 366, 380, 496
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	339, 364
FspBI	CTAG	2 cut(s)	11, 438
Hin1II	CATG	2 cut(s)	343, 368
HinfI	GANTC	3 cut(s)	188, 343, 398
HphI	GGTGA	2 cut(s)	394, 415
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	340, 503
Hpy8I	GTNNAC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	136, 373, 414
HpyCH4V	TGCA	3 cut(s)	258, 368, 447
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	343, 368
Kzo9I	GATC	2 cut(s)	156, 470
LpnPI	CCDG	8 cut(s)	86, 113, 232, 246, 318, 375, 408, 433
MaeI	CTAG	2 cut(s)	11, 438
MaeIII	GTNAC	2 cut(s)	224, 475
MalI	GATC	2 cut(s)	158, 472
MboI	GATC	2 cut(s)	156, 470
MfeI	CAATTG	1 cut(s)	403
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	5 cut(s)	43, 61, 147, 241, 403
MnlI	CCTC	2 cut(s)	109, 501
MseI	TTAA	3 cut(s)	20, 47, 282
MspR9I	CCNGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	156, 470
NlaIII	CATG	2 cut(s)	343, 368
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	224
PagI	TCATGA	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	188, 343, 398
PpuMI	RGGWCCY	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	392
PspPPI	RGGWCCY	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	133, 141
RsaNI	GTAC	2 cut(s)	132, 140
SaqAI	TTAA	3 cut(s)	20, 47, 282
Sau3AI	GATC	2 cut(s)	156, 470
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	7 cut(s)	102, 133, 202, 274, 280, 397, 452
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
SpeI	ACTAGT	1 cut(s)	10
Sse9I	AATT	5 cut(s)	43, 61, 147, 241, 403
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	11, 438
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	136, 373, 414
TaqI	TCGA	1 cut(s)	211
TasI	AATT	5 cut(s)	43, 61, 147, 241, 403
TfiI	GAWTC	3 cut(s)	188, 343, 398
Tru1I	TTAA	3 cut(s)	20, 47, 282
Tru9I	TTAA	3 cut(s)	20, 47, 282
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	5 cut(s)	171, 308, 328, 353, 533
VneI	GTGCAC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	43, 241
XspI	CTAG	2 cut(s)	11, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.