RchiOBHm_Chr6g0244101

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003574
Physical Location & Seq
Reverse (-)
99886 .. 103244
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21878

Sequence Viewer

Length: 675 bp
ATGCCTCGAGCCATCTCCGTTCTGCTCCAGCCCCGATCCCTCCTCCTCTTCACCGTCGTCGGAATTTTCCTTATTTTCGTTTTCACTTCCACCGAGAAAAAGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCATTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTGTTGAAAATTTCAGGGCATTGTGCACAGGAGAAAAAGGTAAAGGTGTTAAGGGAAAAAAACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACAGGACCTGATTCCAATGGGTCACAGTTCTTTATCACCACAATCAAGGCTAGTTGGTTGGATGGGGAGCATGTCGTCTTCGGCAAGGTTATACAGGGCATGGACATGGTGTATGCAATTGAAGGAGGGGCTGGAACCTACAGTGGAAAGCCCAGAAAGAAGGTTGTTATTGCTGACTCAGGAGAAATACCCAAGGACAAGTGGGATGAAGAAAGATGA

Protein Analysis

224

Amino Acids

24.77

Weight (kDa)

6.72

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 53 - 211 3.1e-47 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 342
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 3 cut(s) 63, 232, 409
AfaI GTAC 3 cut(s) 126, 216, 439
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 4 cut(s) 230, 338, 415, 578
AjnI CCWGG 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 247
AlwI GGATC 1 cut(s) 30
AlwNI CAGNNNCTG 2 cut(s) 440, 464
Ama87I CYCGRG 1 cut(s) 6
ApaLI GTGCAC 1 cut(s) 247
ApoI RAATTY 3 cut(s) 63, 232, 409
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 4 cut(s) 43, 371, 463, 484
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 3 cut(s) 20, 356, 512
BciT130I CCWGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 595
BfuAI ACCTGC 1 cut(s) 425
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 2 cut(s) 394, 592
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 648
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 2 cut(s) 523, 667
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 648
BseRI GAGGAG 2 cut(s) 32, 35
BseSI GKGCMC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 647
BspDI ATCGAT 1 cut(s) 380
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 394, 592
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 1 cut(s) 35
BssNAI GTATAC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 648
Bst1107I GTATAC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 6 cut(s) 55, 206, 226, 442, 483, 599
Bst6I CTCTTC 2 cut(s) 53, 102
BstDEI CTNAG 1 cut(s) 634
BstF5I GGATG 2 cut(s) 523, 667
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 434, 530
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 526
BstZ17I GTATAC 1 cut(s) 148
Bsu15I ATCGAT 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 2 cut(s) 523, 667
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 425
CaiI CAGNNNCTG 2 cut(s) 440, 464
CciI TCATGA 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 461
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 3 cut(s) 125, 215, 438
CviAII CATG 6 cut(s) 331, 356, 431, 527, 556, 562
CviJI RGCY 5 cut(s) 11, 31, 506, 587, 607
CviKI_1 RGCY 5 cut(s) 11, 31, 506, 587, 607
CviQI GTAC 3 cut(s) 125, 215, 438
DdeI CTNAG 1 cut(s) 634
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 53, 102
EarI CTCTTC 2 cut(s) 53, 102
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 648
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 6 cut(s) 334, 359, 434, 530, 559, 565
FatI CATG 6 cut(s) 330, 355, 430, 526, 555, 561
FblI GTMKAC 1 cut(s) 147
FokI GGATG 1 cut(s) 530
FspBI CTAG 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 11
Hin1II CATG 6 cut(s) 334, 359, 434, 530, 559, 565
HinfI GANTC 4 cut(s) 334, 377, 467, 632
HphI GGTGA 4 cut(s) 43, 371, 463, 484
Hpy166II GTNNAC 2 cut(s) 148, 249
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 331, 636
Hpy8I GTNNAC 2 cut(s) 148, 249
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 3 cut(s) 361, 572, 610
HpyCH4III ACNGT 6 cut(s) 55, 206, 226, 442, 483, 599
HpyCH4V TGCA 3 cut(s) 249, 434, 572
HpyF3I CTNAG 1 cut(s) 634
Hsp92II CATG 6 cut(s) 334, 359, 434, 530, 559, 565
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 30, 523
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 477
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 4 cut(s) 40, 119, 131, 526
MfeI CAATTG 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 5 cut(s) 63, 186, 232, 409, 573
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 2 cut(s) 40, 495
MnlI CCTC 7 cut(s) 15, 50, 53, 56, 97, 160, 575
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 3 cut(s) 360, 429, 560
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 152
NdeII GATC 1 cut(s) 35
NlaIII CATG 6 cut(s) 334, 359, 434, 530, 559, 565
NlaIV GGNNCC 2 cut(s) 394, 592
NmuCI GTSAC 1 cut(s) 477
NspI RCATGY 2 cut(s) 434, 530
PaeR7I CTCGAG 1 cut(s) 6
PagI TCATGA 1 cut(s) 330
PfeI GAWTC 3 cut(s) 334, 377, 467
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
PpuMI RGGWCCY 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 394, 592
PspPI GGNCC 1 cut(s) 461
PspPPI RGGWCCY 1 cut(s) 461
PspXI VCTCGAGB 1 cut(s) 6
PstNI CAGNNNCTG 2 cut(s) 440, 464
RsaI GTAC 3 cut(s) 126, 216, 439
RsaNI GTAC 3 cut(s) 125, 215, 438
RseI CAYNNNNRTG 3 cut(s) 360, 429, 560
SaqAI TTAA 1 cut(s) 273
Sau3AI GATC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 595
Sfr274I CTCGAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 6
SmiMI CAYNNNNRTG 3 cut(s) 360, 429, 560
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 5 cut(s) 63, 186, 232, 409, 573
SsiI CCGC 1 cut(s) 342
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 6 cut(s) 55, 206, 226, 442, 483, 599
TaqI TCGA 2 cut(s) 7, 380
TasI AATT 5 cut(s) 63, 186, 232, 409, 573
TfiI GAWTC 3 cut(s) 334, 377, 467
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 4 cut(s) 299, 319, 344, 390
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 604
VneI GTGCAC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 3 cut(s) 63, 232, 409
XceI RCATGY 2 cut(s) 434, 530
XhoI CTCGAG 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.