Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Forward (+)

24114220 .. 24117701

Gene Structure 3482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1119400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCGTCGAGAGATCTCCGTCCTGCTTCAGCCTCGATCCCTCCTCGTCTTCTTCGTCCTCGCCATTTTCCTAATTTTCGTTTTCTCGTCCACCCATAAACAGGAGGAAGTGCAAATAGAAGAGGTGCCTGAAATTACCCACAGAGTATTCCTTGATATTGATATTGACAGACAGCACTTAGGTAGAATCGTGATTGGATTATATGGTGAGGTTGTGCCAAAGACTGTTGAAAATTTTAGGGCATTGTGCACAGGGGAAAAGGGCAAAGGTGTTAAGGGGAAACTGCTCCACTATAAGGGAATACCATTTCATCGTATAGTATCTGGGTTCATGATTCAAGGTGGAGATATTGTTTCTCGTGATGGGAAGGGATATGAATCTATATATGGCGGCACATTTCCTGATGAGAATTTCAGAGTGAAACATTCACATGCAGGTGTTGTTTCTATGGTAAATTCAGGACCTGATTCTAATGGCTCACAGTTCTTTATCACCACACTCAAAGCTAGTTGGTTGGACGGGGAGCATGTTGTCTTTGGCAAGGTTATTCAAGGAATGGACACGGTGTATGCAATCGAAGGGGGGGCCGGAACCTACAGTGGAAAACCCAGAAAGAAGGTTGTAATTGCTGAATCAGGAGAGATACCCAAGAGCCAGTGGAATGAGGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

225

Amino Acids

24.88

Weight (kDa)

7.11

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	53 - 212	2.8e-47	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	232, 409, 454
AcuI	CTGAAG	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	100, 295
AgsI	TTSAA	3 cut(s)	230, 338, 551
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	585
ApaLI	GTGCAC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	232, 409, 454
AspS9I	GGNCC	2 cut(s)	461, 585
AsuHPI	GGTGA	2 cut(s)	218, 484
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	251
BccI	CCATC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	595
BfuAI	ACCTGC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	461, 585
BmiI	GGNNCC	3 cut(s)	126, 586, 592
BpiI	GAAGAC	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 295
Bse1I	ACTGG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	100, 295
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	588
BslI	CCNNNNNNNGG	2 cut(s)	100, 295
BsnI	GGCC	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	12, 35
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	126, 586, 592
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	655
BssMI	GATC	2 cut(s)	12, 35
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	226, 483, 565, 599
Bst6I	CTCTTC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	15, 38
BstMBI	GATC	2 cut(s)	12, 35
BstNSI	RCATGY	2 cut(s)	434, 530
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	604, 662
BveI	ACCTGC	1 cut(s)	425
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	461, 585
CviAII	CATG	3 cut(s)	331, 431, 527
CviJI	RGCY	5 cut(s)	31, 477, 506, 587, 654
CviKI_1	RGCY	5 cut(s)	31, 477, 506, 587, 654
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	2 cut(s)	14, 37
DpnII	GATC	2 cut(s)	12, 35
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	461
FaeI	CATG	3 cut(s)	334, 434, 530
FatI	CATG	3 cut(s)	330, 430, 526
Fnu4HI	GCNGC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	1 cut(s)	588
Hin1II	CATG	3 cut(s)	334, 434, 530
HinfI	GANTC	5 cut(s)	186, 334, 377, 467, 632
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	2 cut(s)	218, 484
Hpy166II	GTNNAC	2 cut(s)	90, 249
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	7 cut(s)	8, 190, 331, 359, 401, 459, 636
Hpy8I	GTNNAC	2 cut(s)	90, 249
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	361, 572, 610
HpyCH4III	ACNGT	4 cut(s)	226, 483, 565, 599
HpyCH4V	TGCA	4 cut(s)	112, 249, 434, 572
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	334, 434, 530
Kzo9I	GATC	2 cut(s)	12, 35
LmnI	GCTCC	2 cut(s)	291, 523
MaeI	CTAG	1 cut(s)	507
MalI	GATC	2 cut(s)	14, 37
MboI	GATC	2 cut(s)	12, 35
MboII	GAAGA	3 cut(s)	40, 43, 131
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	6 cut(s)	72, 132, 232, 409, 454, 624
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	42, 50, 53, 68, 97, 115, 202, 658
MseI	TTAA	2 cut(s)	273, 673
MslI	CAYNNNNRTG	2 cut(s)	429, 435
MspI	CCGG	1 cut(s)	588
NdeII	GATC	2 cut(s)	12, 35
NlaIII	CATG	3 cut(s)	334, 434, 530
NlaIV	GGNNCC	3 cut(s)	126, 586, 592
NspI	RCATGY	2 cut(s)	434, 530
PagI	TCATGA	1 cut(s)	330
PaqCI	CACCTGC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	5 cut(s)	186, 334, 377, 467, 632
PkrI	GCNGC	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	126, 586, 592
PspPI	GGNCC	2 cut(s)	461, 585
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	12
RseI	CAYNNNNRTG	2 cut(s)	429, 435
SaqAI	TTAA	2 cut(s)	273, 673
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	2 cut(s)	12, 35
Sau96I	GGNCC	2 cut(s)	461, 585
SduI	GDGCHC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	595
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	429, 435
Sse9I	AATT	6 cut(s)	72, 132, 232, 409, 454, 624
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	226, 483, 565, 599
TaqI	TCGA	3 cut(s)	7, 34, 576
TasI	AATT	6 cut(s)	72, 132, 232, 409, 454, 624
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	5 cut(s)	186, 334, 377, 467, 632
Tru1I	TTAA	2 cut(s)	273, 673
Tru9I	TTAA	2 cut(s)	273, 673
TscAI	CASTG	2 cut(s)	604, 662
TspDTI	ATGAA	3 cut(s)	299, 319, 390
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	604, 662
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	3 cut(s)	232, 409, 454
XceI	RCATGY	2 cut(s)	434, 530
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.