Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003574

Physical Location & Seq

Genomic Coordinates Reverse (-)

17946483 .. 17947974

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGTGGTTCAACCACTTTTTGGGTTTGTCAATTATTATATCGAATAATAATTGCATTAGAAGAAGTACTTGAAATAACCCATAGAGTATACATGGATATTGATATTGAGGAACAGCTCATAGAAAATTTCAGGGCATTGTGCATAGGAGAAAAAGGTAAAGGTATTAATGGAAAACTACTTCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGATATATGGTGGCACTTTTGCTTATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTATTTCTATGGTGAATACAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCGAGTTCGTGTTTTTTGGTGCCTTGTGGATCTATTACTTTTCTTTTGCCTCTATATTCTCTGGAAAGTGATAAAATGAACAAAACAAAGTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

165

Amino Acids

18.38

Weight (kDa)

6.58

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	41 - 134	8.8e-22	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34960 AT4G34960
fragaria_vesca	FvH4_2g01460 FvH4_3g38580
malus_domestica	MD05G1119400.v1.1 MD10G1123000.v1.1
prunus_persica	Prupe.6G057200_v2.0.a1 Prupe.8G163600_v2.0.a1
pyrus_communis	pycom05g11340 pycom10g10540
rosa_chinensis	RchiOBHm_Chr2g0116011 RchiOBHm_Chr2g0167221 RchiOBHm_Chr4g0399621 RchiOBHm_Chr5g0040001 RchiOBHm_Chr5g0045011 RchiOBHm_Chr6g0244101
rosa_laevigata	RLG00000008569 RLG00000012177 RLG00000015382 RLG00000028151
rosa_multiflora	Rmu_co8407487.1_g000001 Rmu_sc0003757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271830 Rroxscaffold_7G00216070
rosa_rugosa	Rorug05G0507400
rosa_samantha	Rh2CG265500 Rh5CG498000 Rh6AG021900 Rh6CG014300 Rh6DG015500
rosa_wichuraiana	Rw5G025170 Rw5G027990 Rw6G001800 Rw7G010360 Rw7G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	127, 304
AfaI	GTAC	2 cut(s)	69, 334
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	12, 74, 233, 310
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	127, 304
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	266, 358, 379
AvaII	GGWCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	418
BccI	CCATC	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	320
BmcAI	AGTACT	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	420
Bsa29I	ATCGAT	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	428
BspACI	CCGC	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	418
BssMI	GATC	1 cut(s)	428
BssNAI	GTATAC	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	378
BstKTI	GATC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	68, 333
CviAII	CATG	4 cut(s)	94, 226, 251, 326
CviJI	RGCY	2 cut(s)	118, 372
CviKI_1	RGCY	2 cut(s)	118, 372
CviQI	GTAC	2 cut(s)	68, 333
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	244
FaeI	CATG	4 cut(s)	97, 229, 254, 329
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	4 cut(s)	93, 225, 250, 325
FblI	GTMKAC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	97, 229, 254, 329
HinfI	GANTC	3 cut(s)	229, 272, 362
HphI	GGTGA	3 cut(s)	266, 358, 379
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	226, 461
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	56, 144, 329
Hsp92II	CATG	4 cut(s)	97, 229, 254, 329
Kzo9I	GATC	1 cut(s)	428
LpnPI	CCDG	6 cut(s)	118, 204, 315, 339, 372, 446
MalI	GATC	1 cut(s)	430
MboI	GATC	1 cut(s)	428
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	1 cut(s)	428
MluCI	AATT	4 cut(s)	32, 51, 127, 304
MnlI	CCTC	2 cut(s)	103, 459
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	2 cut(s)	255, 324
NdeII	GATC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	97, 229, 254, 329
NlaIV	GGNNCC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	329
PagI	TCATGA	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	229, 272, 362
PflMI	CCANNNNNTGG	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	356
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	356
PspPPI	RGGWCCY	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	2 cut(s)	69, 334
RsaNI	GTAC	2 cut(s)	68, 333
RseI	CAYNNNNRTG	2 cut(s)	255, 324
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	428
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	69
SetI	ASST	5 cut(s)	120, 160, 166, 334, 361
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	2 cut(s)	255, 324
Sse9I	AATT	4 cut(s)	32, 51, 127, 304
SsiI	CCGC	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	43, 275
TasI	AATT	4 cut(s)	32, 51, 127, 304
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	229, 272, 362
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TspDTI	ATGAA	5 cut(s)	194, 214, 239, 285, 491
Van91I	CCANNNNNTGG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	2 cut(s)	127, 304
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.