AT5G02950
ERF Family

Tudor PWWP MBT superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002940
Physical Location & Seq
Forward (+)
690685 .. 693099
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02950.2

Sequence Viewer

Length: 1899 bp
ATGTCTACGGAACCAGAAGGAGTCGAATCTGACTCCAACGCTGATTTTGCCATAAATGCGTCGAGTTTTGACTACGGTATGGCTCACACATCTGAAACCCTAGCTGATCCCATGAGCTTTCAAGCTCAGGACTTGGTAGTGAACCTCACTGGAGTTGAGCGAAAAGTATTTGTCTCTGCTCGTGATGATAAGGATAGTCTCTGTAACGGGGTTGATTTTGATGCTGATTCAGATCTGCTTAAGAACAAGGATAAGAAAGGATTTTCTAAAGAGAATCTGAAGCTTTTTGACTCAGATTTGGTTTGGGCTAAACTAAGAAGTTATCCATGGTGGCCTGGACTGGTCTTTGATAAATCTGTTGCCTCTAAAGCTGCGATGAGGCACTTCAAGAAAGGAAATGTCTTGGTTGCGTATTTTGGGGATTGTACATTTGCTTGGAATAATGCATCTCAGATAAAGCCTTTTCATCAGAATTTCTCTCAAATGCAGGAGCAGAGTAACTCCGCTGAGTTTCGTGATGCTATTGATTGTGCTTTGGATGAGGTTTCAAGGAGAGTAGAGTTTGGTTTATCTTGCTCTTGTGTTTCAGAGGAAGCCTATAACAAACTCAAGACTCAGAACATAATCAATGCTGGAATTCGTGAGGACTCAAGTGTTAGATACGGTGGAGACAAGTTATCGGATGGAATCTCTTTTGAACCTGCTAAACTTGTGGATTATATGAAGCATTTAGCTTGCTTTCCTTGCTATGATGCGACTGAGAAGCTGCAATTTGTGATTAACCGAGCTCAGGTATTGGCTTTTCAACAATGGAAAGACTATTCTCACTTCATTGACTATGAAACATTTGTAAGGTCGGTGGAATCTGCTGCGACCCTGGCTTCTCTCCCAGAAGTAAATATGGATGAAGGAATATCTGCCAAAAAGAGAAAGACAGATTATAAAGATAATGCTGAACAGACAAAGGAGAAGACTTTGTCAGATTTGACTGTAAAGAAACGCTGTGGGAGCAGATCAACTGAGAAATTGGATGGTAAGTCGCATTCTGAAAAGAAGCGTAAGGTTGAGTCTTCGGAATCTGGTAAGTCTGAGAAAAGGATCAAGAAAAGTCAGCAAAAGGAGGATTCAGTGTCTAAACACTCTAATGAGGAAAGTCTTTTGTCAGTGGGTGATACTAATAAACTGCAGAAGACGGCTGAACCGTGTCATGGAACTGGAGTGGAAAATGAGATGAATTCTTTAACTCCTACACTTAAGCCTTGCCGTGCTTCTAAATCTACGGAAGTTGAGAATGAGAAGACTAAGAAGCCGAGACATCAAGAGCTTGCTGAAAGAAAGATTTCTTCTCCTGATGAGATGCTCTCAAGCCTTCACGCTGCCAATACCTCAACGGGAATACCTGATTCAATCAACATAGACCCCTCGAATTATGAAGATTTTGAAAAGTTCATTAATGAACTGTTTTGCAGTAAACTCAATGGTGACTCAAAGAAGGCAAGTATCACTGAGACATCAGAACCTTGTGATAAGAAAGACTCTGCAGAAGAAGAGATATTACCTGCAAATAAAGAAATCACTGGCTCAGGCTCGAAAGAGCAAATTGGTCTCAAGGACTGTTCTGCAGATTCATTACCACCCTATGCTTTAGTCCTCAACTTTGCGGATTCAGGTTCGGTTCCATCTGAAGAAAAGCTGAACGAGATATTTAAACGTTACGGTCCTCTCCATGAGTCTAAGACTAAGGTCACGATGAAGGGTAAGAGAGCCAAAGTTGTGTTCAAAAGAGGGGAAGACGCAAAGACTGCCTTTAGCAGCGCAGGGAAATACAGCATCTTTGGACCTTCTCTTCTAAGTTACAGACTCGAGTATGTTTGCCCCAAACGGAAAAAAACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

632

Amino Acids

70.51

Weight (kDa)

6.22

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 99 - 182 2.5e-19 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
Acc36I ACCTGC 2 cut(s) 709, 1567
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 504, 1661
AclI AACGTT 1 cut(s) 1711
AclWI GGATC 2 cut(s) 101, 1106
AcsI RAATTY 3 cut(s) 472, 636, 1234
AcuI CTGAAG 2 cut(s) 299, 1704
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 2 cut(s) 790, 1208
AflII CTTAAG 2 cut(s) 239, 1253
AgsI TTSAA 8 cut(s) 122, 388, 549, 698, 806, 1407, 1442, 1780
AjnI CCWGG 2 cut(s) 334, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 1760, 1792
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 6 cut(s) 178, 203, 663, 1306, 1502, 1610
AlwI GGATC 2 cut(s) 101, 1106
Ama87I CYCGRG 1 cut(s) 1862
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 5 cut(s) 371, 766, 869, 1376, 1812
ApoI RAATTY 3 cut(s) 472, 636, 1234
AseI ATTAAT 1 cut(s) 1452
Asp700I GAANNNNTTC 1 cut(s) 1339
AspLEI GCGC 1 cut(s) 1817
AspS9I GGNCC 2 cut(s) 1718, 1838
AsuHPI GGTGA 2 cut(s) 1181, 1493
AvaI CYCGRG 1 cut(s) 1862
AvaII GGWCC 2 cut(s) 1718, 1838
BanII GRGCYC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 1539, 1571
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 5 cut(s) 977, 1062, 1196, 1304, 1797
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 5 cut(s) 358, 753, 856, 1363, 1824
BccI CCATC 3 cut(s) 677, 1025, 1687
BceAI ACGGC 2 cut(s) 1209, 1248
BciT130I CCWGG 2 cut(s) 336, 878
BcoDI GTCTC 6 cut(s) 178, 203, 663, 1306, 1502, 1610
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 3 cut(s) 1184, 1539, 1620
BfrI CTTAAG 2 cut(s) 239, 1253
BfuAI ACCTGC 2 cut(s) 709, 1567
BglII AGATCT 1 cut(s) 232
BisI GCNGC 5 cut(s) 372, 767, 870, 1377, 1813
BlsI GCNGC 5 cut(s) 373, 768, 871, 1378, 1814
Bme1390I CCNGG 2 cut(s) 336, 878
Bme18I GGWCC 2 cut(s) 1718, 1838
BmeT110I CYCGRG 1 cut(s) 1862
BmgT120I GGNCC 2 cut(s) 1718, 1838
BmiI GGNNCC 2 cut(s) 12, 1677
BmrFI CCNGG 2 cut(s) 336, 878
BmsI GCATC 6 cut(s) 211, 455, 508, 742, 1347, 1839
BoxI GACNNNNGTC 1 cut(s) 1742
BpiI GAAGAC 5 cut(s) 977, 1062, 1196, 1304, 1797
BplI GAGNNNNNCTC 2 cut(s) 1346, 1378
BpmI CTGGAG 2 cut(s) 171, 1236
Bpu10I CCTNAGC 3 cut(s) 126, 789, 1582
BpuEI CTTGAG 4 cut(s) 593, 634, 1348, 1592
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 1610
BsaJI CCNNGG 2 cut(s) 326, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 790, 1208
Bse1I ACTGG 4 cut(s) 154, 345, 1219, 1582
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 336, 878
BseDI CCNNGG 2 cut(s) 326, 876
BseGI GGATG 4 cut(s) 544, 688, 910, 1036
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 790, 1208
BseNI ACTGG 4 cut(s) 154, 345, 1219, 1582
BseXI GCAGC 5 cut(s) 358, 753, 856, 1363, 1824
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 790
BsiHKCI CYCGRG 1 cut(s) 1862
BslI CCNNNNNNNGG 2 cut(s) 790, 1208
BsmAI GTCTC 6 cut(s) 178, 203, 663, 1306, 1502, 1610
BsmI GAATGC 1 cut(s) 1042
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 1610
BsoBI CYCGRG 1 cut(s) 1862
Bsp1286I GDGCHC 1 cut(s) 790
Bsp1407I TGTACA 1 cut(s) 425
Bsp143I GATC 4 cut(s) 106, 232, 1013, 1098
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 2 cut(s) 504, 1661
BspANI GGCC 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 12, 1677
BspMAI CTGCAG 3 cut(s) 1188, 1543, 1624
BspMI ACCTGC 2 cut(s) 709, 1567
BspPI GGATC 2 cut(s) 101, 1106
BspTI CTTAAG 2 cut(s) 239, 1253
BspTNI GGTCTC 1 cut(s) 1610
BsrGI TGTACA 1 cut(s) 425
BsrI ACTGG 4 cut(s) 154, 345, 1219, 1582
BssECI CCNNGG 2 cut(s) 326, 876
BssMI GATC 4 cut(s) 106, 232, 1013, 1098
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 336, 878
Bst4CI ACNGT 7 cut(s) 77, 665, 991, 1203, 1461, 1616, 1718
Bst6I CTCTTC 2 cut(s) 1542, 1851
BstAFI CTTAAG 2 cut(s) 239, 1253
BstAPI GCANNNNNTGC 1 cut(s) 1802
BstAUI TGTACA 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 736, 1326
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 4 cut(s) 544, 688, 910, 1036
BstHHI GCGC 1 cut(s) 1817
BstKTI GATC 4 cut(s) 109, 235, 1016, 1101
BstMAI GTCTC 6 cut(s) 178, 203, 663, 1306, 1502, 1610
BstMBI GATC 4 cut(s) 106, 232, 1013, 1098
BstMWI GCNNNNNNNGC 7 cut(s) 47, 56, 368, 744, 878, 1008, 1802
BstNI CCWGG 2 cut(s) 336, 878
BstPAI GACNNNNGTC 1 cut(s) 1742
BstSCI CCNGG 2 cut(s) 334, 876
BstSFI CTRYAG 3 cut(s) 1184, 1539, 1620
BstV1I GCAGC 5 cut(s) 358, 753, 856, 1363, 1824
BstV2I GAAGAC 5 cut(s) 977, 1062, 1196, 1304, 1797
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 4 cut(s) 544, 688, 910, 1036
BtsIMutI CAGTG 5 cut(s) 147, 1134, 1170, 1503, 1575
BveI ACCTGC 2 cut(s) 709, 1567
Cac8I GCNNGC 2 cut(s) 736, 1326
CfoI GCGC 1 cut(s) 1817
Cfr13I GGNCC 2 cut(s) 1718, 1838
CseI GACGC 2 cut(s) 48, 1802
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 112, 327, 1208, 1727, 1896
CviQI GTAC 1 cut(s) 426
DpnI GATC 4 cut(s) 108, 234, 1015, 1100
DpnII GATC 4 cut(s) 106, 232, 1013, 1098
DraI TTTAAA 1 cut(s) 1708
Eam1104I CTCTTC 2 cut(s) 1542, 1851
EarI CTCTTC 2 cut(s) 1542, 1851
Ecl136II GAGCTC 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 1610
Eco47I GGWCC 2 cut(s) 1718, 1838
Eco53kI GAGCTC 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 299, 1704
Eco88I CYCGRG 1 cut(s) 1862
EcoICRI GAGCTC 1 cut(s) 788
EcoRI GAATTC 2 cut(s) 636, 1234
EcoRII CCWGG 2 cut(s) 334, 876
EcoT14I CCWWGG 1 cut(s) 326
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 5 cut(s) 115, 330, 1211, 1730, 1899
FalI AAGNNNNNCTT 2 cut(s) 1790, 1822
FatI CATG 5 cut(s) 111, 326, 1207, 1726, 1895
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 372, 767, 870, 1377, 1813
FokI GGATG 4 cut(s) 551, 695, 917, 1043
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 5 cut(s) 372, 767, 870, 1377, 1813
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 1816
GluI GCNGC 5 cut(s) 372, 767, 870, 1377, 1813
GsuI CTGGAG 2 cut(s) 171, 1236
HaeIII GGCC 1 cut(s) 334
HgaI GACGC 2 cut(s) 48, 1802
HhaI GCGC 1 cut(s) 1817
Hin1II CATG 5 cut(s) 115, 330, 1211, 1730, 1899
Hin6I GCGC 1 cut(s) 1815
HinP1I GCGC 1 cut(s) 1815
HindIII AAGCTT 1 cut(s) 281
HphI GGTGA 2 cut(s) 1181, 1493
Hpy166II GTNNAC 3 cut(s) 6, 142, 1472
Hpy8I GTNNAC 3 cut(s) 6, 142, 1472
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 6 cut(s) 11, 902, 1379, 1486, 1747, 1851
HpyCH4III ACNGT 7 cut(s) 77, 665, 991, 1203, 1461, 1616, 1718
HpyCH4IV ACGT 1 cut(s) 1711
HpyCH4V TGCA 8 cut(s) 446, 487, 769, 1186, 1467, 1541, 1562, 1622
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 56, 368, 744, 878, 1008, 1802
HpySE526I ACGT 1 cut(s) 1711
Hsp92II CATG 5 cut(s) 115, 330, 1211, 1730, 1899
HspAI GCGC 1 cut(s) 1815
Kzo9I GATC 4 cut(s) 106, 232, 1013, 1098
LmnI GCTCC 2 cut(s) 490, 1008
Lsp1109I GCAGC 5 cut(s) 358, 753, 856, 1363, 1824
LweI GCATC 6 cut(s) 211, 455, 508, 742, 1347, 1839
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 1711
MaeIII GTNAC 6 cut(s) 203, 497, 1481, 1712, 1744, 1853
MalI GATC 4 cut(s) 108, 234, 1015, 1100
MboI GATC 4 cut(s) 106, 232, 1013, 1098
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 7 cut(s) 472, 636, 770, 1025, 1234, 1426, 1599
MmeI TCCRAC 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 1339
MseI TTAA 6 cut(s) 240, 780, 1241, 1254, 1452, 1707
MslI CAYNNNNRTG 1 cut(s) 1143
MspA1I CMGCKG 1 cut(s) 506
MspCI CTTAAG 2 cut(s) 239, 1253
MspR9I CCNGG 2 cut(s) 336, 878
Mva1269I GAATGC 1 cut(s) 1042
MvaI CCWGG 2 cut(s) 336, 878
MwoI GCNNNNNNNGC 7 cut(s) 47, 56, 368, 744, 878, 1008, 1802
NcoI CCATGG 1 cut(s) 326
NdeII GATC 4 cut(s) 106, 232, 1013, 1098
NlaIII CATG 5 cut(s) 115, 330, 1211, 1730, 1899
NlaIV GGNNCC 2 cut(s) 12, 1677
NmeAIII GCCGAG 1 cut(s) 1335
NmuCI GTSAC 2 cut(s) 1481, 1744
NsiI ATGCAT 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 1862
PcsI WCGNNNNNNNCGW 1 cut(s) 1199
PctI GAATGC 1 cut(s) 1042
PdmI GAANNNNTTC 1 cut(s) 1339
PflFI GACNNNGTC 1 cut(s) 976
PkrI GCNGC 5 cut(s) 373, 768, 871, 1378, 1814
PshAI GACNNNNGTC 1 cut(s) 1742
PshBI ATTAAT 1 cut(s) 1452
PsiI TTATAA 1 cut(s) 942
Psp124BI GAGCTC 1 cut(s) 790
Psp1406I AACGTT 1 cut(s) 1711
Psp6I CCWGG 2 cut(s) 334, 876
PspGI CCWGG 2 cut(s) 334, 876
PspN4I GGNNCC 2 cut(s) 12, 1677
PspPI GGNCC 2 cut(s) 1718, 1838
PspXI VCTCGAGB 1 cut(s) 1862
PstI CTGCAG 3 cut(s) 1188, 1543, 1624
PsuI RGATCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 976
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 1143
SacI GAGCTC 1 cut(s) 790
SaqAI TTAA 6 cut(s) 240, 780, 1241, 1254, 1452, 1707
SatI GCNGC 5 cut(s) 372, 767, 870, 1377, 1813
Sau3AI GATC 4 cut(s) 106, 232, 1013, 1098
Sau96I GGNCC 2 cut(s) 1718, 1838
ScrFI CCNGG 2 cut(s) 336, 878
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 6 cut(s) 211, 455, 508, 742, 1347, 1839
SfcI CTRYAG 3 cut(s) 1184, 1539, 1620
Sfr274I CTCGAG 1 cut(s) 1862
SinI GGWCC 2 cut(s) 1718, 1838
SlaI CTCGAG 1 cut(s) 1862
SmiMI CAYNNNNRTG 1 cut(s) 1143
SmlI CTYRAG 7 cut(s) 239, 608, 649, 1253, 1363, 1607, 1862
SmoI CTYRAG 7 cut(s) 239, 608, 649, 1253, 1363, 1607, 1862
Sse9I AATT 7 cut(s) 472, 636, 770, 1025, 1234, 1426, 1599
SsiI CCGC 2 cut(s) 504, 1661
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 1 cut(s) 790
StyD4I CCNGG 2 cut(s) 334, 876
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 7 cut(s) 77, 665, 991, 1203, 1461, 1616, 1718
TaiI ACGT 1 cut(s) 1714
TaqI TCGA 5 cut(s) 24, 62, 1424, 1589, 1863
TasI AATT 7 cut(s) 472, 636, 770, 1025, 1234, 1426, 1599
TatI WGTACW 1 cut(s) 425
Tru1I TTAA 6 cut(s) 240, 780, 1241, 1254, 1452, 1707
Tru9I TTAA 6 cut(s) 240, 780, 1241, 1254, 1452, 1707
TscAI CASTG 5 cut(s) 154, 1134, 1170, 1510, 1582
TseFI GTSAC 2 cut(s) 1481, 1744
TseI GCWGC 5 cut(s) 371, 766, 869, 1376, 1812
Tsp45I GTSAC 2 cut(s) 1481, 1744
TspGWI ACGGA 3 cut(s) 23, 1295, 1897
TspRI CASTG 5 cut(s) 154, 1134, 1170, 1510, 1582
Tth111I GACNNNGTC 1 cut(s) 976
Vha464I CTTAAG 2 cut(s) 239, 1253
VpaK11BI GGWCC 2 cut(s) 1718, 1838
VspI ATTAAT 1 cut(s) 1452
XapI RAATTY 3 cut(s) 472, 636, 1234
XhoI CTCGAG 1 cut(s) 1862
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 1339
XspI CTAG 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.